View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_16 (Length: 442)
Name: NF3074_low_16
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 7446515 - 7446676
Alignment:
| Q |
1 |
taacgtcaatttagggcaagcatgttaccatgtttcttctctggtggtcttgatattttttctattctcgtttagctctaaaaaagttgtttgcttagtt |
100 |
Q |
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| T |
7446515 |
taacgtcaatttagggcaagcatgttaccatgtttcttctctggtggtcttgatattttttctattctcgtttagctctaaaaaagttgtttgcttagtt |
7446614 |
T |
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| Q |
101 |
taatccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggac |
162 |
Q |
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| T |
7446615 |
taatccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggac |
7446676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 233 - 435
Target Start/End: Original strand, 7446740 - 7446940
Alignment:
| Q |
233 |
atgaacgttcgttcatatgagctctgggctcgatgatatccaaaccgtacattattaagttttcacttctcagccacacgatatttcatgtcacgtggaa |
332 |
Q |
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| T |
7446740 |
atgaacgttcgttcatatgagctctgggctcgatgaaatccaaaccgtacattattaagttttcactactcagccacacgatatttcatgtcacgtggaa |
7446839 |
T |
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| Q |
333 |
tttagaaggnnnnnnnnntgatatacgtgaaattaaaagaaagataaatcagaagcataaacaaggaattccaaaaatgtcaccatatttccgtacaata |
432 |
Q |
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| T |
7446840 |
tttagaa--aaaaaaaaatgatatacgtgaaattaaaagaaagataaatcagaagcataaacaaggaattccaaaaatgtcaccatatttccgtacaata |
7446937 |
T |
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| Q |
433 |
tta |
435 |
Q |
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| T |
7446938 |
tta |
7446940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7461503 - 7461569
Alignment:
| Q |
1 |
taacgtcaatttagggcaagcatgttaccatgtttcttctctggtggtcttgatattttttctattc |
67 |
Q |
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| T |
7461503 |
taacgtcaatttagggcaagcatgctaccatgtttcttctctggtggtcttgattttttttttattc |
7461569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 7461594 - 7461674
Alignment:
| Q |
79 |
taaaaaagttgtttgcttagtttaatccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggac |
162 |
Q |
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| T |
7461594 |
taaaaaagttgtttgcttagtttaataccctaaa---tgttgaaagagagaataggcactagcatgcaacgagttctttaggac |
7461674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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