View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_20 (Length: 403)

Name: NF3074_low_20
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_20
NF3074_low_20
[»] chr1 (4 HSPs)
chr1 (144-384)||(31213739-31213978)
chr1 (144-384)||(31219494-31219733)
chr1 (7-87)||(31213602-31213682)
chr1 (7-87)||(31219357-31219437)
[»] chr7 (2 HSPs)
chr7 (230-384)||(47895569-47895723)
chr7 (7-87)||(47895781-47895861)
[»] chr6 (1 HSPs)
chr6 (275-376)||(4960014-4960115)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 144 - 384
Target Start/End: Original strand, 31213739 - 31213978
Alignment:
Q  144 aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213739 aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt 31213838  T
Q  244 ttaacatatttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttga 343  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  31213839 ttaacatatt-acaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttga 31213937  T
Q  344 cttcagcttccctatactctaaggcttcctcctgtctccta 384  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31213938 cttcagcttccctatactctaaggcttcctcctgtctccta 31213978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 144 - 384
Target Start/End: Original strand, 31219494 - 31219733
Alignment:
Q  144 aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219494 aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt 31219593  T
Q  244 ttaacatatttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttga 343  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  31219594 ttaacatatt-acaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttga 31219692  T
Q  344 cttcagcttccctatactctaaggcttcctcctgtctccta 384  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31219693 cttcagcttccctatactctaaggcttcctcctgtctccta 31219733  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 31213602 - 31213682
Alignment:
Q  7 ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa 87  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213602 ggagccgagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa 31213682  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 31219357 - 31219437
Alignment:
Q  7 ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa 87  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219357 ggagccgagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa 31219437  T

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Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 230 - 384
Target Start/End: Complemental strand, 47895723 - 47895569
Alignment:
Q  230 ctccttcaaagattttaacatatttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggt 329  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||    
T  47895723 ctccttcaaagattttaacatatttacaagtgccttgcttttgaaccttcattctctcagagatcatactcacaacttgctctttttcaacaatcttggt 47895624  T
Q  330 ttccctaaggttgacttcagcttccctatactctaaggcttcctcctgtctccta 384  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47895623 ttccctaaggttgacttcagctttcctatactctaaggcttcctcctgtctccta 47895569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 47895861 - 47895781
Alignment:
Q  7 ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa 87  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47895861 ggagccgagacacaggccttgcagaacagtttgagctagaaatgataacatttgaattctccaaactttctcgatcagcaa 47895781  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 4960014 - 4960115
Alignment:
Q  275 cctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttgacttcagcttccctatactctaaggcttcctc 374  Q
    ||||||||||||||||  || |||||| | ||||||||| ||   |||| || ||||||||| ||||||||||   |||||||||||| |||||||||||    
T  4960014 cctttattctctcagacttcgtactcaaagcttgctcttcttttccaaccttcgtttccctatggttgacttcgatttccctatactccaaggcttcctc 4960113  T
Q  375 ct 376  Q
    ||    
T  4960114 ct 4960115  T

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