View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_21 (Length: 395)
Name: NF3074_low_21
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21268830 - 21268748
Alignment:
| Q |
1 |
gaaaaatgatacctttgatactgttaaggtgtttggttactttgttagcgcaaccttcgcaatgcatatagactttcaaaacc |
83 |
Q |
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| T |
21268830 |
gaaaaatgatacctttgatgccgttaaggtgtttggtgactttgttagcgcaaccttcgcaatgcatatagactttcaaaacc |
21268748 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 21268523 - 21268469
Alignment:
| Q |
323 |
tgggtcagagtttaatacatgaaaacacaaagaaaacgagtgataatgagtgagt |
377 |
Q |
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| T |
21268523 |
tgggtcagagtctaatacatgaaaacacaaagaaaaagagtgataatgagtgagt |
21268469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 21268585 - 21268547
Alignment:
| Q |
261 |
ttatttccaccatttccacccttatttttcttcttctgt |
299 |
Q |
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| T |
21268585 |
ttattcccaccatttccacccttatttttcttcttctgt |
21268547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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