View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_26 (Length: 374)
Name: NF3074_low_26
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 33368138 - 33367797
Alignment:
| Q |
18 |
ccacctctcctcttccaccctccataactaaagctctggttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgc |
117 |
Q |
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| T |
33368138 |
ccacctctcctcttccaccctccataactaaagctctcgttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgc |
33368039 |
T |
|
| Q |
118 |
cataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaagagtcccttctctggtctgcactgaataacaatggccgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33368038 |
cataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaagagtcccttctctggtctgcactgaataacaatggtcgc |
33367939 |
T |
|
| Q |
218 |
actgttttcatcgatgaaaacgaatatattatctcaaaattcgaacagtccaacccaggtatcgaagcttacgatgttcagttcacaagcaaagttagtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367938 |
actgttttcatcgatgaaaacgaatatattatctcaaaattcgaacagtccaacccaggtatcgaagcttacgatgttcagttcacaagcaaagttagtg |
33367839 |
T |
|
| Q |
318 |
agtatccaaagttgctttctcatgcaaaagaagagtccaaac |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367838 |
agtatccaaagttgctttctcatgcaaaagaagagtccaaac |
33367797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 33372342 - 33372010
Alignment:
| Q |
15 |
ccaccacctctcctcttccaccctccataactaaagctctggttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaa |
114 |
Q |
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||||| |||||||||||||||||||| |||| ||||| || | ||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
33372342 |
ccaccgcctctcctcttccaccctccgtaaccaaagccctcctccactatgcctcctccttaaacaccaccaccaaatccatgtcctttgaagaaatcaa |
33372243 |
T |
|
| Q |
115 |
cgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaagagtcccttctctggtctgcactgaataacaatggc |
214 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || | |||||| |
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| T |
33372242 |
cgctataacaaccactcttcaccttacaccacaccccaacttcctcatctttggtctcacccatgagtcacttctctggtctgcactaaaccaaaatggc |
33372143 |
T |
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| Q |
215 |
cgcactgttttcatcgatgaaaacgaatatattatctcaaaattcgaacagtccaacccaggtatcgaagcttacgatgttcagttcacaagcaaagtta |
314 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||| |||||||| |
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| T |
33372142 |
cgcactgttttcatcgacgaaaacgaatacatgatctcaaaatttgaacagtccaacccaggaatagaagcttatgatgttcagttcacaaccaaagtta |
33372043 |
T |
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| Q |
315 |
gtgagtatccaaagttgctttctcatgcaaaag |
347 |
Q |
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|||||||||| ||| | |||||||||||||||| |
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| T |
33372042 |
gtgagtatcctaagcttctttctcatgcaaaag |
33372010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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