View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_27 (Length: 373)
Name: NF3074_low_27
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 39922945 - 39922607
Alignment:
| Q |
17 |
agaagttgagatttttaactttacaaattcacagcaaaatggcattctaaacatgaacatacgtataagtccgcaaaactaaatcaaacccatactatat |
116 |
Q |
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| T |
39922945 |
agaagttgagatttttaactttacaaattcacagcaaaatggcattctaaacat------acgtataactccgcaaaactaaatcaaacccatactatat |
39922852 |
T |
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| Q |
117 |
cacatcaccaagaaaggattatgtatctatggactttttgttttaaggat--atctatgaacttataatcaacatactctagcaaaaatggtattaactt |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39922851 |
cacatcaccaagaaagcattatgtatctatggactttttgttttaaggatgtatctatgaacttataatcaacatactctagcataaatggtattaactt |
39922752 |
T |
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| Q |
215 |
ggacccttgatcatttaatttaatgtttgatcattgaccaatgtgtatgnnnnnnnnnnnnnnnnnnnnnnncgaaccgttaaatggaatatcaattttc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39922751 |
ggacccttgatcatttaatttaatgtttgatcattgaccaatgtgtatgaaaaaatatatatcaaaaaatatcgaaccgttaaatggaatatcaattttc |
39922652 |
T |
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| Q |
315 |
tggagagattagtttctgctcatgcgtgtataacagacagtataa |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39922651 |
tggagagattagtttctgctcatgcgtgtataacagacagtataa |
39922607 |
T |
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