View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_31 (Length: 360)
Name: NF3074_low_31
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 3771165 - 3770904
Alignment:
| Q |
80 |
tagtgtgtcttttgtcctgctctataaattagcaaacaatccatgccatttgcatcttccattttcaatcaaatggataatcctcactttcttgtcattc |
179 |
Q |
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| T |
3771165 |
tagtgtgtcttttgacctgctctataaattagcaaacaatccatgccatttgcatcttccattttcaatcaaatgggtatccctcactttcttgttattc |
3771066 |
T |
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| Q |
180 |
catacccaatcccaggtcatataaatcctctcatgcaattatgtcatgctttaagaaaacatggctgcaagatcactttccttaacacagaattcagcca |
279 |
Q |
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| T |
3771065 |
catacccaattccaggtcatataaatcccctcatgcaattatgtcatgttttagccaaacatggctgcaagatcactttccttaacacagaattcagcca |
3770966 |
T |
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| Q |
280 |
caaaagaaccaacaacaataatgaacaaagtcaagaaacaataaactttgtcacactcccag |
341 |
Q |
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| T |
3770965 |
caaaagaaccaacaacaataatgaacaaagtcaagaaacaataaactttgtcacactcccag |
3770904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 3783511 - 3783378
Alignment:
| Q |
161 |
cctcactttcttgtcattccatacccaatcccaggtcatataaatcctctcatgcaattatgtcatgctttaagaaaacatggctgcaagatcactttcc |
260 |
Q |
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| T |
3783511 |
cctcattttcttgttattccatacccaatagcaggtcatgtgaatcctcttatgcaattatctcatcttttatccaaacatggctgcaaaatcacttttc |
3783412 |
T |
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| Q |
261 |
ttaacacagaattcagccacaaaagaaccaacaa |
294 |
Q |
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| T |
3783411 |
tcaacacagaatttagcaacaaaagaaccaacaa |
3783378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 3783340 - 3783298
Alignment:
| Q |
299 |
aatgaacaaagtcaagaaacaataaactttgtcacactcccag |
341 |
Q |
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| T |
3783340 |
aatgaacaaagtcaagaaacaataaactttgttacactcccag |
3783298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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