View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_32 (Length: 359)
Name: NF3074_low_32
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 48052407 - 48052738
Alignment:
| Q |
16 |
tgaagtggatgatgaattcaagaacgcaggaacttcgcgttggaaaattcgaagacgttggttagtggaagaagtagaaaccaattcggagagagaaacg |
115 |
Q |
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| T |
48052407 |
tgaagtggatgatgaattcaagaacgcaggaacttcgcgttggaaaattcgaagacgttggttagtggaagaagtagaaaccaattcggagagagaaacg |
48052506 |
T |
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| Q |
116 |
agagattgcagagattccgccattgttgaaatggcgagatctgaacgaagctgtcgagctgagaatcagat---taataataactaatgattattaatat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
48052507 |
agagattgcagagattccgccattgttgaaatggcgagatctgaacgaagctgtcgaactgagaatcagattaataataataactaatgattattaatat |
48052606 |
T |
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| Q |
213 |
aatattcgaacttcgtcttcagcaaata----cacgcacgcagggtttgagattggcttgctagggttttggctttctgctatatctgtgactgtcccta |
308 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48052607 |
aatattcgagcttcgtcttcagcaaatacacgcacgcacgcagggtttgagattggcttgctagggttttggctttccgctatatctgtgactgtcccta |
48052706 |
T |
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| Q |
309 |
tcaaattcgggatttcatcgtgacgaaaataa |
340 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48052707 |
tcaaattcgggatttcatcgtgacgaaaataa |
48052738 |
T |
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