View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_33 (Length: 357)

Name: NF3074_low_33
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_33
NF3074_low_33
[»] chr3 (5 HSPs)
chr3 (187-356)||(3180839-3181008)
chr3 (321-357)||(24205121-24205157)
chr3 (322-357)||(15864789-15864824)
chr3 (322-357)||(52369739-52369774)
chr3 (320-357)||(27903575-27903612)
[»] chr5 (4 HSPs)
chr5 (14-116)||(20928444-20928546)
chr5 (180-346)||(20946371-20946535)
chr5 (325-357)||(30502468-30502500)
chr5 (325-357)||(30542811-30542843)
[»] chr4 (2 HSPs)
chr4 (320-357)||(24343449-24343486)
chr4 (321-353)||(3144722-3144754)
[»] scaffold0504 (1 HSPs)
scaffold0504 (322-357)||(8794-8829)
[»] scaffold0049 (1 HSPs)
scaffold0049 (314-344)||(56864-56894)
[»] chr6 (2 HSPs)
chr6 (319-357)||(12787741-12787779)
chr6 (318-351)||(1911962-1911995)
[»] chr2 (1 HSPs)
chr2 (322-356)||(11308084-11308118)
[»] chr1 (1 HSPs)
chr1 (320-357)||(48115337-48115374)
[»] chr8 (1 HSPs)
chr8 (321-357)||(44067459-44067495)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 3181008 - 3180839
Alignment:
Q  187 ttgttgatacagcagggactgaacctgtgcattctttagcaggaaagtcagctaacaaagtggctaaggttgtttcaagtgatataataccaaccatttc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181008 ttgttgatacagcagggactgaacctgtgcattctttagcaggaaagtcagctaacaaagtggctaaggttgtttcaagtgatataataccaaccatttc 3180909  T
Q  287 gcagcttctctggcttttgatgacagaataataacctatgaagcacggacacaaacacggacaccggaca 356  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3180908 gcagcttctctgacttttgatgacagaataataacctatgaagcacggacacaaacacggacaccggaca 3180839  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 24205157 - 24205121
Alignment:
Q  321 cctatgaagcacggacacaaacacggacaccggacac 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24205157 cctatgaagcacggacacagacacggacaccggacac 24205121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 15864789 - 15864824
Alignment:
Q  322 ctatgaagcacggacacaaacacggacaccggacac 357  Q
    |||||||||||||||||| |||||||||||||||||    
T  15864789 ctatgaagcacggacacagacacggacaccggacac 15864824  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 52369739 - 52369774
Alignment:
Q  322 ctatgaagcacggacacaaacacggacaccggacac 357  Q
    |||||||||||||||||| |||||||||||||||||    
T  52369739 ctatgaagcacggacacagacacggacaccggacac 52369774  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 27903575 - 27903612
Alignment:
Q  320 acctatgaagcacggacacaaacacggacaccggacac 357  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  27903575 acctatcaagcacggacacagacacggacaccggacac 27903612  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 20928444 - 20928546
Alignment:
Q  14 agatgcaagcactttcaatcccctaatgctgataaggctatgcctgttgttggtaatcaagtgggaaaaaggttggtgtaggagacatagcaggaaatgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  20928444 agatgcaagcactttcaatcccctaatgctgataaggctatgcctgttgttggtaatcaagtgggaaaaagtttggtgtaggagacttagcaggaaatgg 20928543  T
Q  114 gca 116  Q
    |||    
T  20928544 gca 20928546  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 346
Target Start/End: Original strand, 20946371 - 20946535
Alignment:
Q  180 gataacattgttgatacagcagggactgaacctgtgcattctttagcaggaaagtcagctaacaaagtggctaaggttgtttcaagtgata-taatacca 278  Q
    ||||| ||||||||||||||||||||||||   ||||||||||| ||| |||| || |||||  ||||||||||||||||||||||||||| ||||||||    
T  20946371 gataatattgttgatacagcagggactgaattggtgcattcttttgcacgaaaatcggctaatgaagtggctaaggttgtttcaagtgatattaatacca 20946470  T
Q  279 accatttcgcagcttctctggcttttgatgacagaataataacctatgaagcacggacacaaacacgg 346  Q
    |||||||| |||   ||||||||||| |||||||||| || ||||||||| |||||| ||| ||||||    
T  20946471 accatttcacag---ctctggcttttcatgacagaatcattacctatgaaacacggatacatacacgg 20946535  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 30502500 - 30502468
Alignment:
Q  325 tgaagcacggacacaaacacggacaccggacac 357  Q
    ||||||||||| |||||||||||||||||||||    
T  30502500 tgaagcacggatacaaacacggacaccggacac 30502468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 30542843 - 30542811
Alignment:
Q  325 tgaagcacggacacaaacacggacaccggacac 357  Q
    ||||||||||| |||||||||||||||||||||    
T  30542843 tgaagcacggatacaaacacggacaccggacac 30542811  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 24343449 - 24343486
Alignment:
Q  320 acctatgaagcacggacacaaacacggacaccggacac 357  Q
    |||||||||||||||||||| |||||||||||||||||    
T  24343449 acctatgaagcacggacacagacacggacaccggacac 24343486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 3144754 - 3144722
Alignment:
Q  321 cctatgaagcacggacacaaacacggacaccgg 353  Q
    ||||||||||||||||||| |||||||||||||    
T  3144754 cctatgaagcacggacacagacacggacaccgg 3144722  T

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Target: scaffold0504 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 357
Target Start/End: Complemental strand, 8829 - 8794
Alignment:
Q  322 ctatgaagcacggacacaaacacggacaccggacac 357  Q
    |||||||||||||||||| |||||||||||||||||    
T  8829 ctatgaagcacggacacatacacggacaccggacac 8794  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 56864 - 56894
Alignment:
Q  314 ataataacctatgaagcacggacacaaacac 344  Q
    |||||||||||||||||||||||||||||||    
T  56864 ataataacctatgaagcacggacacaaacac 56894  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 12787741 - 12787779
Alignment:
Q  319 aacctatgaagcacggacacaaacacggacaccggacac 357  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  12787741 aacctatgaagcatggacacaaacacggataccggacac 12787779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 1911995 - 1911962
Alignment:
Q  318 taacctatgaagcacggacacaaacacggacacc 351  Q
    |||||||||||||| |||||||||||||||||||    
T  1911995 taacctatgaagcatggacacaaacacggacacc 1911962  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 356
Target Start/End: Complemental strand, 11308118 - 11308084
Alignment:
Q  322 ctatgaagcacggacacaaacacggacaccggaca 356  Q
    |||||||||||||||||| ||||||||||||||||    
T  11308118 ctatgaagcacggacacagacacggacaccggaca 11308084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 48115374 - 48115337
Alignment:
Q  320 acctatgaagcacggacacaaacacggacaccggacac 357  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  48115374 acctatgaagcactgacacaaacatggacaccggacac 48115337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 44067459 - 44067495
Alignment:
Q  321 cctatgaagcacggacacaaacacggacaccggacac 357  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  44067459 cctatgaagcacggacacagacacggacaccagacac 44067495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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