View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_34 (Length: 354)
Name: NF3074_low_34
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 55711248 - 55711555
Alignment:
| Q |
18 |
aggaatggcatacatcactggagtaattaatgacaggctggagtctctggcacaaactgtctgatcacgcccaggaagaacttcacttatactcttcagg |
117 |
Q |
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| T |
55711248 |
aggaatggcatacatcactggagtaattaatgacaggctggagtctctggcacaaactgtctgatcacgcccaggaagaacttcacttatactcttcagg |
55711347 |
T |
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| Q |
118 |
tgaaagatcagattggtagctatttctacttcccg-cagtttgaatgaataaagccgctgttgcatttggtagcttcagaatttggagccgtgctcacat |
216 |
Q |
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| T |
55711348 |
tgaaagatcagattggtagctatttctacttcccgtcattttgaatgaataaagccgctgttgcatttggtagcttcagaatttggagccgtgctcacat |
55711447 |
T |
|
| Q |
217 |
tcacattcctgtcccctttcctccctccgcaggagactttaccatacttgctggtgattggttcaagctaggccaccgcgtaattaaatcttttgcattc |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55711448 |
tcagattcctgtcccctttcctccctccgcaggagactttaccatacttgctggtgattggttcaagctaggccaccgtgtaattaaatcttttgcattc |
55711547 |
T |
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| Q |
317 |
atttcaat |
324 |
Q |
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|||||||| |
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| T |
55711548 |
atttcaat |
55711555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 55295325 - 55295627
Alignment:
| Q |
17 |
caggaatggcatacatcactggagtaattaatgacaggctggagtctctggcacaaactgtctgatcacgcccaggaagaacttcacttatactcttcag |
116 |
Q |
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| T |
55295325 |
caggaatggcatacagcacaggaggaactcatggcaggatggagtttctggcacaaactgtccgatcccgcctgggaagaacttcacttacactctccag |
55295424 |
T |
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| Q |
117 |
gtgaaagatcagattggtagctatttctacttccc-gcagtttgaatgaataaagccgctgttgcatttggtagcttcagaatttggagccgtgctcaca |
215 |
Q |
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| T |
55295425 |
gtgaaggaccagatcggtacctacttctacttcccatcacttggaatgcataaagctgctggtgcatttggtggcatcagaatttggagccgtcc----- |
55295519 |
T |
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| Q |
216 |
ttcacattcctgtcccctttcctccctccgcaggagactttaccatacttgctggtgattggttcaagctaggccaccgcgtaattaaatcttttgcatt |
315 |
Q |
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|| ||||||||| || |||||||| | || || ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |
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| T |
55295520 |
-tcgcattcctgttccttttcctcctcctgctggggactttaccttacttgctggtgattggtccaagctaggccaccgcgtaatcaaattctttgcatt |
55295618 |
T |
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| Q |
316 |
catttcaat |
324 |
Q |
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||||||||| |
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| T |
55295619 |
catttcaat |
55295627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 17346340 - 17346394
Alignment:
| Q |
94 |
agaacttcacttatactcttcaggtgaaagatcagattggtagctatttctactt |
148 |
Q |
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||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |
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| T |
17346340 |
agaacttcacttatattcttcaagtaaaagatcagattggtagctatttctactt |
17346394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 17137447 - 17137400
Alignment:
| Q |
101 |
cacttatactcttcaggtgaaagatcagattggtagctatttctactt |
148 |
Q |
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| T |
17137447 |
cacttatattcttcaagtaaaagatcagattggcagctatttctactt |
17137400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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