View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_35 (Length: 350)
Name: NF3074_low_35
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 41075269 - 41075587
Alignment:
| Q |
12 |
atgaacagctgcaaaattcatggtattagctagcacgaaatttctttcgtcgtctctaatatagaaaccgattacagttctgttttgggagatggaaaaa |
111 |
Q |
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| T |
41075269 |
atgaacagctgcaaaattcatggttttagctagcacgaaatttccttcatcgtctctaatgcagaaaccgattccagttctgttttgggagatggaaaaa |
41075368 |
T |
|
| Q |
112 |
cttgcatcaatattacatttgagtcgaccgcgagaaggccgctgccacttcaccggaacaggagcagttgtgtgcgcaccatgagcatgagcagctgaat |
211 |
Q |
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| T |
41075369 |
cttgcatcaatattacatttgagtcagccacgagaaggcctctgccacttcatcggaacaggagcagttgcgtgcgca-catgagcatgagcagctgaat |
41075467 |
T |
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| Q |
212 |
gttgaactgtactcaacatgggctgttcatcatgaggaaaaagcttgctggtgcgttcctgttatgttggcagaaagccaatcttctagcagaacacgtg |
311 |
Q |
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| T |
41075468 |
gttgaattatactcaacatgggctgttcatcatga-gaaaaagcttgctggtgcattcctgttatgttggcagaaagccaatcttctagcagaacacgtg |
41075566 |
T |
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| Q |
312 |
ctctgtctactacaattgcac |
332 |
Q |
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| T |
41075567 |
ctctgtctactaaaattgcac |
41075587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 18984982 - 18985143
Alignment:
| Q |
12 |
atgaacagctgcaaaattcatggtattagctagcacgaaatttctttcgtcgtctctaatatagaaaccgattacagttctgttttgggagatg-gaaaa |
110 |
Q |
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| T |
18984982 |
atgaacagctgcaaaattcatggttttggcgagcacaaaagttccctcttcgtctctgacacacatgccaattcctgttctgtttaggga-atgagagaa |
18985080 |
T |
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| Q |
111 |
acttgcatcaatattacatttgagtcgaccgcgagaaggccgctgccacttcaccggaacagg |
173 |
Q |
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| T |
18985081 |
acttgcatcaatattgcatttgagtctcccgcaagagggacactgccacttcaccggaacagg |
18985143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 2175345 - 2175457
Alignment:
| Q |
20 |
ctgcaaaattcatggtattagctagcacgaaatttctttcgtcgtctctaatatagaaaccgattacagttctgttttgggagatggaaaaacttgcatc |
119 |
Q |
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|||||||||||||||| ||||||||||| ||||||| |||| |||||||| | ||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
2175345 |
ctgcaaaattcatggttttagctagcacaaaatttccttcgccgtctctac---acaaaccaattccagttctgttttgggagatggaaaaacttgcatc |
2175441 |
T |
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| Q |
120 |
aatattacatttgagt |
135 |
Q |
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| T |
2175442 |
aatattacatttgagt |
2175457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 332
Target Start/End: Original strand, 2175474 - 2175621
Alignment:
| Q |
188 |
caccatgagcatgagcagctgaatgttgaactgtactcaacatgggctgttcatcatgaggaaaaagcttgctggtgcgttcctgttatgttggcagaaa |
287 |
Q |
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|||||||| |||| || ||||| |||||| | | |||| |||||||||||||| ||| | |||| ||||||| ||| | ||||||||||||||| || |
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| T |
2175474 |
caccatgaatatgatcatctgaaggttgaattattctcagcatgggctgttcattatgtg-aaaatgcttgctactgcatacctgttatgttggcaaaat |
2175572 |
T |
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| Q |
288 |
gccaatc----ttctagcagaacacgtgctctgtctactacaattgcac |
332 |
Q |
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||||||| ||||| ||| ||||||||||| |||||||| ||||||| |
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| T |
2175573 |
gccaatcttctttctaacagcacacgtgctctatctactaccattgcac |
2175621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 2112366 - 2112438
Alignment:
| Q |
12 |
atgaacagctgcaaaattcatggtattagctagcacgaaatttctttcgtcgtctctaatatagaaaccgatt |
84 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||||||||| |
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| T |
2112366 |
atgaacagctgcaaaattcatggttttagctagcacgaaatttccttcgtcgtctctaatacacaaaccgatt |
2112438 |
T |
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