View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3074_low_36 (Length: 348)
Name: NF3074_low_36
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 38933910 - 38933582
Alignment:
| Q |
7 |
atatatatattaaaagttttcacaa-gacatataaaaaa-gaagagataggaaatgaattgcattgcatgcatgatgcattgctgggacagtcagtcagg |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38933910 |
atatatatattaaaagttttcacaaagacatataaaaaaagaagagataggaaatgaattgcattgcatgcatgatgcattgctgggacagtcag----g |
38933815 |
T |
|
| Q |
105 |
aagcactcactgagcttacaagccatgccccatcctatatggaagggcattgaaagaaagagaagcattgcctgtacgtgtcacaaatgaaagtgctaag |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38933814 |
aagcact----gagcttacaagccatgccccatcctatatggaagggcattgaaagaaagaggagcattgcctgtacgtgtcacaaatgaaagggctaag |
38933719 |
T |
|
| Q |
205 |
cnnnnnnngatac---gaagaagagtatgtatgggtccaaacaaaaagccctgacatgttgcatttaattctcttttctgtttgaagctggagtgtgtgc |
301 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38933718 |
ctttttttgatacgaagaagaagagtatgtatgggtccacacaaaaagccctgacatgttgcatttaattctcttttctgtttgaagctggagtgtgtac |
38933619 |
T |
|
| Q |
302 |
acttttctgtctttaacttagtagtactcacaggttc |
338 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
38933618 |
acttttctgtctttaacttagtagaactcactggttc |
38933582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 32670932 - 32670903
Alignment:
| Q |
253 |
tgacatgttgcatttaattctcttttctgt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32670932 |
tgacatgttgcatttaattctcttttctgt |
32670903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University