View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3074_low_41 (Length: 324)
Name: NF3074_low_41
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_41 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 24 - 324
Target Start/End: Original strand, 30024625 - 30024925
Alignment:
| Q |
24 |
agtagttcattaacctagtacaacaaacattgaaagtaacaaactataagctaaatgctaatttgatcaattcaaggacagaaagtgaccaaataattag |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024625 |
agtagttcattaacctagtacaacaaacattgaaagtaacaaactataagctaaatgctaatttgatcaattcaaggacagaaagtgaccaaataattag |
30024724 |
T |
|
| Q |
124 |
ccatagaacaagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttaca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024725 |
ccatagaacaagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttaca |
30024824 |
T |
|
| Q |
224 |
agcctgtgggcttccataactacccgtgcaacaatacttaggtgagttaaaagcataacaagcactcttacaacccaccacttgattcatctcactcgac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
30024825 |
agcctgtgggcttccataactacccgtgcaacaatactcaggtgagttaaaagcataacaagcactcttacagcccaccacttgattcatgtcacttgac |
30024924 |
T |
|
| Q |
324 |
c |
324 |
Q |
| |
|
| |
|
|
| T |
30024925 |
c |
30024925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 304
Target Start/End: Original strand, 45273168 - 45273340
Alignment:
| Q |
132 |
caagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtg |
231 |
Q |
| |
|
|||||| ||||||| ||||| |||||| | ||||||||||||||||| |||||||| || |||||||| |||||| ||||||||| || | ||||| |
|
|
| T |
45273168 |
caagtagcaatactggtagggtcatcataagcataagagtaagcctttgggcaagcagttttgaagattcttgaataagcagtgggcttgcaggtctgtg |
45273267 |
T |
|
| Q |
232 |
ggcttccataactacccgtgcaacaatacttaggtgagttaaaagcataacaagcactcttacaacccaccac |
304 |
Q |
| |
|
|| | ||| | |||| || || |||||| |||| ||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
45273268 |
gggtaccaaagttaccagtacagcaatacctaggagagttgaaagcagcacaagcacttctacaacccaccac |
45273340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University