View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_42 (Length: 320)

Name: NF3074_low_42
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_42
NF3074_low_42
[»] chr1 (7 HSPs)
chr1 (9-320)||(48043227-48043538)
chr1 (151-320)||(48056587-48056756)
chr1 (152-320)||(48051312-48051468)
chr1 (160-313)||(48037329-48037487)
chr1 (173-307)||(48045200-48045331)
chr1 (9-90)||(48051132-48051209)
chr1 (9-88)||(48056456-48056532)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 48043227 - 48043538
Alignment:
Q  9 gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggattt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  48043227 gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggattt 48043326  T
Q  109 aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48043327 aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatag 48043426  T
Q  209 attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043427 attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat 48043526  T
Q  309 catgatgtaaca 320  Q
    ||||||||||||    
T  48043527 catgatgtaaca 48043538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 48056587 - 48056756
Alignment:
Q  151 caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag 250  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||    
T  48056587 caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag 48056686  T
Q  251 aatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaaca 320  Q
    ||||||||||||||| |||||| |||||||| |||||| |||||||||||| ||||||||||||| ||||    
T  48056687 aatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaaca 48056756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 152 - 320
Target Start/End: Original strand, 48051312 - 48051468
Alignment:
Q  152 accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga 251  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||||    
T  48051312 accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga 48051411  T
Q  252 atgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaaca 320  Q
    |||||||            || |||||||| |||||||||||||||||||| |||||||||||||||||    
T  48051412 atgtttt------------ataactgagtccatgttgttggagtttttacacgagatcatgatgtaaca 48051468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 48037329 - 48037487
Alignment:
Q  160 catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt 258  Q
    ||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| |||    
T  48037329 catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt 48037428  T
Q  259 acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgagatcatga 313  Q
    ||||| | || ||| ||||||||    ||||||| || |||||||||||||||||||||    
T  48037429 acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatga 48037487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 48045200 - 48045331
Alignment:
Q  173 accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgaca 269  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||      |||| ||||||||||   ||||||||||||| | ||     
T  48045200 accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacg 48045293  T
Q  270 aattactgagtcaatgttgttggagtttttacatgaga 307  Q
     || |||||| |||||||| || |||||||||||||||    
T  48045294 cataactgagccaatgttggtgtagtttttacatgaga 48045331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48051132 - 48051209
Alignment:
Q  9 gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca 90  Q
    ||||||| ||||||||||| ||||||    ||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  48051132 gaagaatgttgtgaacctgaatggta----aataagtataatactctctttgatacctttgttggtaaaccaagctatcaca 48051209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 48056456 - 48056532
Alignment:
Q  9 gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatca 88  Q
    ||||||||||||||| ||| ||||||  ||| |||||| |   |||||||||||||||||| ||||||||| ||||||||    
T  48056456 gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttatca 48056532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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