View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_43 (Length: 319)
Name: NF3074_low_43
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 2350733 - 2351015
Alignment:
| Q |
13 |
gaaatgaagaaggtatgacccatttgaccatagaaaaatttaagaaataacaataacaaaggtataagctttaacataaaaaattcagcttaacaattag |
112 |
Q |
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| T |
2350733 |
gaaatgaagaaggtatgacccatttgaccatagaaaaatttaagaaataacaataacaaaggtataagctttaacataaaaaattcagcttaacaattag |
2350832 |
T |
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| Q |
113 |
agtaagatagatcctataaaaatatgaaaagggtgaaagagagaaaagagatatatactgatcatgttcagagatgacagatgaagcaggtgaacgaaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2350833 |
agtaagatagatcctataaaaatatgaaaagggtgaaagagagaaaagagatatatactgatcatgttcagagatgacagatgaagcaggtgaacgaaga |
2350932 |
T |
|
| Q |
213 |
ccggagagatgaggaagtgactgtgatggtgacggcgggaaagccatgtacctgccggcgccggaggaagacatcatcgatca |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2350933 |
ccggagagatgaggaagtgactgtgatggtgacggcgggaaagccatgtacctgccggcgccggaggaagacatcatcgatca |
2351015 |
T |
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