View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_47 (Length: 316)
Name: NF3074_low_47
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 26875261 - 26875538
Alignment:
| Q |
20 |
ccttatacattcatgacaataattaatagtacacttattcattcatgagtattattttgatttgatctatgccaaagaaccacaaacgaccttgttctca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26875261 |
ccttatacattcatgacaataattaatagtacacttattc----atgagtattattttgatttgatctatgccaaagaaccacaaacgaccttgttctca |
26875356 |
T |
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| Q |
120 |
aggcaatgtttagaaaaacaaggatttgcctaaaatctggtaaaaatgatacggaaattaaataggttaattgtatttccagcgaaatgtacctttagtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26875357 |
aggcaatgtttagaaaaacaaggatttgcctaaaatctggtaaaaatgatacggaaattaaataggttaattgtatttccagcgaaatgtacctttagtt |
26875456 |
T |
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| Q |
220 |
cagaaattgtgtgcctcttttctctgttttctcttgtcatgtgtcttcacgtgttaatgataatacgatgatacctcctatg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26875457 |
cagaaattgtgtgcctcttttctctgttttctcttgtcatgtgtgttcacgtgttaatgataatacgatgatacctcctatg |
26875538 |
T |
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