View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_48 (Length: 309)

Name: NF3074_low_48
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_48
NF3074_low_48
[»] chr4 (6 HSPs)
chr4 (15-201)||(6827208-6827394)
chr4 (15-143)||(14169871-14170000)
chr4 (15-143)||(14156311-14156440)
chr4 (67-143)||(19125254-19125331)
chr4 (77-143)||(12005785-12005851)
chr4 (264-293)||(6827116-6827145)
[»] chr8 (3 HSPs)
chr8 (15-143)||(10122830-10122959)
chr8 (15-143)||(11179430-11179558)
chr8 (77-143)||(21505295-21505361)
[»] chr1 (3 HSPs)
chr1 (10-143)||(45438222-45438356)
chr1 (15-129)||(45433406-45433521)
chr1 (67-138)||(29805970-29806042)
[»] chr6 (3 HSPs)
chr6 (92-143)||(18282253-18282304)
chr6 (92-142)||(9210539-9210589)
chr6 (15-143)||(4885125-4885253)
[»] chr3 (4 HSPs)
chr3 (67-138)||(14170373-14170445)
chr3 (15-143)||(55252359-55252487)
chr3 (91-142)||(6028934-6028985)
chr3 (15-143)||(55256398-55256526)
[»] scaffold0373 (1 HSPs)
scaffold0373 (264-293)||(13129-13158)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 6827394 - 6827208
Alignment:
Q  15 aagaaagacatatgctgaaatacagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatatttac 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6827394 aagaaagacatatgctgaaatacagtgtgaccgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatatttac 6827295  T
Q  115 ggaataaatattctacataatattctatcataannnnnnnnnnnnnnnnnggtacaatattctatcataatttacttagagagtaag 201  Q
    |||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||    
T  6827294 ggaataaatattctacataatattctatcataatttatttatttatttttggtacaatattctatcataatttacttagagagtaag 6827208  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 14169871 - 14170000
Alignment:
Q  15 aagaaagacatatgctgaaata-cagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatattta 113  Q
    |||| ||||||||||||||||| | ||||||  |||||||||||| |||| ||||||||||| |||||||||| ||| ||||||| ||||||||||||||    
T  14169871 aagagagacatatgctgaaataaccgtgtgactgaatagcactacggaatgtctattatatagagttaagtagcttggagactaagctatgatatattta 14169970  T
Q  114 cggaataaatattctacataatattctatc 143  Q
    |  |||||||||||||||||||||||||||    
T  14169971 caaaataaatattctacataatattctatc 14170000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 14156311 - 14156440
Alignment:
Q  15 aagaaagacatatgctgaaata-cagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatattta 113  Q
    |||| ||||||||||||||||| | ||||||  |||||||| ||| |||| ||||||||||| |||||||||| ||| ||||||| ||||||||||||||    
T  14156311 aagagagacatatgctgaaataaccgtgtgactgaatagcagtacggaatgtctattatatagagttaagtagcttggagactaagctatgatatattta 14156410  T
Q  114 cggaataaatattctacataatattctatc 143  Q
    |  |||||||||||||||||||||||||||    
T  14156411 caaaataaatattctacataatattctatc 14156440  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 19125331 - 19125254
Alignment:
Q  67 tattatata-aagttaagtagtttgaagactaaactatgatatatttacggaataaatattctacataatattctatc 143  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||  ||| |||||||||| ||||||||||||    
T  19125331 tattatatagaagttaagtagtttagagactaaactatgatatatttacaaaatgaatattctacgtaatattctatc 19125254  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 12005785 - 12005851
Alignment:
Q  77 agttaagtagtttgaagactaaactatgatatatttacggaataaatattctacataatattctatc 143  Q
    |||||||||| ||  ||||||| ||||||||||||||| |||| ||||||| |||||||||||||||    
T  12005785 agttaagtagcttagagactaagctatgatatatttacagaatgaatattcaacataatattctatc 12005851  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 6827145 - 6827116
Alignment:
Q  264 caaaatggtaaaggctaattaaggactatc 293  Q
    ||||||||||||||||||||||||||||||    
T  6827145 caaaatggtaaaggctaattaaggactatc 6827116  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 10122959 - 10122830
Alignment:
Q  15 aagaaagacatatgctgaaata-cagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatattta 113  Q
    |||| ||||||||||||||||| | ||||||  |||||||||||| |||| ||||||||||| |||||||||| ||| ||||||| ||||||||||||||    
T  10122959 aagagagacatatgctgaaataaccgtgtgactgaatagcactacggaatgtctattatatagagttaagtagcttggagactaagctatgatatattta 10122860  T
Q  114 cggaataaatattctacataatattctatc 143  Q
    | ||||||||||||||||||||||||||||    
T  10122859 cagaataaatattctacataatattctatc 10122830  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 11179558 - 11179430
Alignment:
Q  15 aagaaagacatatgctgaaatacagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatatttac 114  Q
    |||| |||||||||||||||||| ||||||  |||||||||||| |||| ||||||||||| |||||||||  ||| |||| || ||||||||||||||     
T  11179558 aagagagacatatgctgaaataccgtgtgactgaatagcactactgaatgtctattatatagagttaagtaacttggagaccaagctatgatatatttag 11179459  T
Q  115 ggaataaatattctacataatattctatc 143  Q
     ||||||||||||||||||||||| ||||    
T  11179458 agaataaatattctacataatattttatc 11179430  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 21505295 - 21505361
Alignment:
Q  77 agttaagtagtttgaagactaaactatgatatatttacggaataaatattctacataatattctatc 143  Q
    |||||||||| ||  ||||||| ||| |||||||||||  ||| | |||||||||||||||||||||    
T  21505295 agttaagtagcttagagactaagctaggatatatttacataatgactattctacataatattctatc 21505361  T

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Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 45438222 - 45438356
Alignment:
Q  10 cagagaagaaagacatatgctgaaata-cagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatat 108  Q
    ||||||| | ||||||||||||||||| |  |||||  |||||||||||| |||| ||||||||||| |||||||||| ||| |||||||  ||||||||    
T  45438222 cagagaaaagagacatatgctgaaataaccatgtgactgaatagcactacggaatatctattatatagagttaagtagcttggagactaagttatgatat 45438321  T
Q  109 atttacggaataaatattctacataatattctatc 143  Q
    |||||| ||||||||||||||||||||||||||||    
T  45438322 atttacagaataaatattctacataatattctatc 45438356  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 45433406 - 45433521
Alignment:
Q  15 aagaaagacatatgctgaaata-cagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatattta 113  Q
    |||| ||||||||||||||||| | ||||||  |||||||||||| |||| ||||||||||| |||||||||| ||| ||||||| |||||||||||||     
T  45433406 aagagagacatatgctgaaataaccgtgtgactgaatagcactacggaatgtctattatatagagttaagtagcttggagactaagctatgatatatttc 45433505  T
Q  114 cggaataaatattcta 129  Q
    | ||||||||||||||    
T  45433506 cagaataaatattcta 45433521  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 29805970 - 29806042
Alignment:
Q  67 tattatata-aagttaagtagtttgaagactaaactatgatatatttacggaataaatattctacataatatt 138  Q
    ||||||||| ||||||||||||||  ||||||| ||| ||||||||||| |||  |||||| || ||||||||    
T  29805970 tattatatagaagttaagtagtttagagactaagctaggatatatttacagaaagaatattttaaataatatt 29806042  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 18282253 - 18282304
Alignment:
Q  92 agactaaactatgatatatttacggaataaatattctacataatattctatc 143  Q
    ||||||| ||||||||||||||  |||||||||||| |||||||||||||||    
T  18282253 agactaagctatgatatatttatagaataaatattcaacataatattctatc 18282304  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 9210539 - 9210589
Alignment:
Q  92 agactaaactatgatatatttacggaataaatattctacataatattctat 142  Q
    ||||||| ||||| ||||||||| ||||||||||| |||| ||||||||||    
T  9210539 agactaagctatgctatatttacagaataaatattttacacaatattctat 9210589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 4885253 - 4885125
Alignment:
Q  15 aagaaagacatatgctgaaatacagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatatttac 114  Q
    |||| ||||||||| |||||||| |||||   ||||||||| || |||  | ||||||||  |  ||||||| |||  | |||| |||||||||||||||    
T  4885253 aagagagacatatgatgaaataccgtgtgtctgaatagcacaacggaagatttattatattgaagtaagtagcttggggcctaagctatgatatatttac 4885154  T
Q  115 ggaataaatattctacataatattctatc 143  Q
     |||| |||||||  ||||||||| ||||    
T  4885153 agaatgaatattcatcataatattatatc 4885125  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 14170373 - 14170445
Alignment:
Q  67 tattatataaa-gttaagtagtttgaagactaaactatgatatatttacggaataaatattctacataatatt 138  Q
    ||||||||||| || |||||| ||  ||||||| ||||||||||||||| |||| ||||||| ||||||||||    
T  14170373 tattatataaaagtaaagtagcttagagactaagctatgatatatttacagaatgaatattcaacataatatt 14170445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 55252487 - 55252359
Alignment:
Q  15 aagaaagacatatgctgaaatacagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatatttac 114  Q
    |||| ||||||||| |||||||| |||||   ||||||||| || |||  | ||||||||| |  ||||||| |||  | |||| |||||||||||||||    
T  55252487 aagagagacatatgatgaaataccgtgtgtctgaatagcacaacggaagatttattatatagaagtaagtagcttggggcctaagctatgatatatttac 55252388  T
Q  115 ggaataaatattctacataatattctatc 143  Q
     |||| |||||||  ||||||||| ||||    
T  55252387 agaatgaatattcatcataatattatatc 55252359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 6028934 - 6028985
Alignment:
Q  91 aagactaaactatgatatatttacggaataaatattctacataatattctat 142  Q
    |||||||||||| |||||||||||  || |||||||||| ||||||||||||    
T  6028934 aagactaaactaggatatatttacaaaagaaatattctaaataatattctat 6028985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 55256526 - 55256398
Alignment:
Q  15 aagaaagacatatgctgaaatacagtgtgatcgaatagcactaccgaatctctattatataaagttaagtagtttgaagactaaactatgatatatttac 114  Q
    |||| ||||||||| |||||||| |||||   ||||||||| || |||  | ||||||||| |  ||||||| |||  | |||| |||||||||||||||    
T  55256526 aagagagacatatgatgaaataccgtgtgtctgaatagcacaacggaagatttattatatagaagtaagtagcttggggcctaagctatgatatatttac 55256427  T
Q  115 ggaataaatattctacataatattctatc 143  Q
      ||| |||||||  ||||||||| ||||    
T  55256426 acaatgaatattcatcataatattatatc 55256398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 13129 - 13158
Alignment:
Q  264 caaaatggtaaaggctaattaaggactatc 293  Q
    ||||||||||||||||||||||||||||||    
T  13129 caaaatggtaaaggctaattaaggactatc 13158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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