View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3074_low_51 (Length: 299)
Name: NF3074_low_51
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 45515019 - 45514741
Alignment:
| Q |
3 |
cattgtcccgacaataaaattctgttaaagctttattttcatcgttgttattataagccaaaatggccaataatttgttgacattatttgtctaattgaa |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45515019 |
cattgtcccggcaataaaattctgttaaagctttattttcatcgttgttattataagccaaaatggccaataatttgttgacattatttgtctaattgaa |
45514920 |
T |
|
| Q |
103 |
tgttacatttcaaataagaaaatataaccattcatacatgtatcactatggtttacatatgtagagtgttggttatgttacatttttccgaagttactgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514919 |
tgttacatttcaaataagaaaatataaccattcatacatgtatcactatggtttacatatgtagagtgttggttatgttacatttttccgaagttactgt |
45514820 |
T |
|
| Q |
203 |
tacaaaacaacatgagnnnnnnntaggcagaaaaaatacatcttttactagagtactagagaaatacaaatgccaaagg |
281 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514819 |
tacaaaacaacatgagaaaaaaataggcagaaaaaatacatcttttactagagtactagagaaatacaaatgccaaagg |
45514741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University