View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_56 (Length: 295)

Name: NF3074_low_56
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_56
NF3074_low_56
[»] chr3 (1 HSPs)
chr3 (1-295)||(595175-595469)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 595175 - 595469
Alignment:
Q  1 acaaatgttaactgttaagaattaaatatacataatgttaaactttttggtgatgacaaataaatgatattttatatctaacattgtttaaacccaaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  595175 acaaatgttaactgttaagaattaaatatacataatgttaaactttttggtgatgacaaatgaatgatattttatatctaacattgtttaaacccaaata 595274  T
Q  101 tcactcgtaattgtgaaacattactaaactaccattagttacaatggtgaattgaaaaacttcatggcaatcatagcaggtagatatgctgcccgaaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |    
T  595275 tcactcgtaattgtgaaacattactaaactaccattagttacaatggtggattgaaaaacttcatggcaatcacagcaggtagatatgctgcccaaaacg 595374  T
Q  201 catcagcaaacaactgataaatagacaaactcagtaatataaactacaagaaacagaagttatggtccaaaaatatatgaggtggtttcagtgta 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595375 catcagcaaacaactgataaatagacaaactcagtaatataaactacaagaaacagaagttatggtccaaaaatatatgaggtggtttcagtgta 595469  T

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