View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_6 (Length: 617)

Name: NF3074_low_6
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_6
NF3074_low_6
[»] scaffold0504 (5 HSPs)
scaffold0504 (374-601)||(7799-8026)
scaffold0504 (1-238)||(7312-7561)
scaffold0504 (1-90)||(7622-7711)
scaffold0504 (239-308)||(7541-7610)
scaffold0504 (239-291)||(7691-7743)
[»] chr7 (3 HSPs)
chr7 (38-238)||(12026928-12027140)
chr7 (239-372)||(12026724-12026857)
chr7 (1-90)||(12026837-12026926)
[»] chr3 (1 HSPs)
chr3 (533-595)||(54631869-54631931)
[»] chr1 (2 HSPs)
chr1 (84-211)||(18188581-18188720)
chr1 (533-601)||(18189434-18189502)
[»] chr4 (2 HSPs)
chr4 (39-116)||(52894863-52894938)
chr4 (384-440)||(52895068-52895124)


Alignment Details
Target: scaffold0504 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 374 - 601
Target Start/End: Original strand, 7799 - 8026
Alignment:
Q  374 tgaaagatcttcaagttatgagattggagaacgttctggaaacgttaacttggtagaagggcacaaccacaacaggtcaagtgctgaggatggagaagtt 473  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  7799 tgaaagatcttcaagttatgagattggagaaggttctcgaaacgttaacctggtagaagggcacaaccacaacaggtcaagtggtgagggtggagaagtt 7898  T
Q  474 tctgaaagcttgaatgtgtttgatgtattgagatatcttgctaatactgctaataaagtagaagatgatggtcttactttgttggaatctcttaagcgtg 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7899 tctgaaagcttgaatgtgtttgatgtattgagatatcttgctaataccgctaataaagtagaagatgatggtcttactttgttggaatctcttaagcgtg 7998  T
Q  574 ccggtattaaatttcctcgtccaagttg 601  Q
    ||||||||||||||||||||||||||||    
T  7999 ccggtattaaatttcctcgtccaagttg 8026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7561 - 7312
Alignment:
Q  1 tcgtgaaagttctttatttcatccaaaaacaccgaatgatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattgacgtcggaag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  7561 tcgtgaaagttctttatttcatccaaaaacaccgaatcatcagaaggatcatctaacacctgggacccagcagagggaggaacaacattgacgtcggaag 7462  T
Q  101 agtgaagtgaggcttgctctggcggagtgtgaaagac------------atcctgggtgtcgggagcagagagcatgacgacgggagcggaggagggtgg 188  Q
    ||||||||||||||||||| ||||||||||||||| |             ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7461 agtgaagtgaggcttgctccggcggagtgtgaaaggcttcttgggggttgtcctgggtgtcgggagcagagagcatgacgacgggagtggaggagggtgg 7362  T
Q  189 gatatcggagttaacctgagatgacatgctgcggtggtggtggtgatggt 238  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7361 gatatcggagttaacctgagatgacatgttgcggtggtggtggtggtggt 7312  T

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Target: scaffold0504; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7711 - 7622
Alignment:
Q  1 tcgtgaaagttctttatttcatccaaaaacaccgaatgatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattg 90  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7711 tcgtgaaagttctttatttcatccaaaaacaccgaatcatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattg 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 7541 - 7610
Alignment:
Q  239 tgaaataaagaactttcacgatgactttcaattagggtttggagaagattttctgcctgtgaataacgat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  7541 tgaaataaagaactttcacgatgactttcaattagggtttggagaagattttccgcctgtgaatgacgat 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 7691 - 7743
Alignment:
Q  239 tgaaataaagaactttcacgatgactttcaattagggtttggagaagattttc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7691 tgaaataaagaactttcacgatgactttcaattagggtttggagaagattttc 7743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 12026928 - 12027140
Alignment:
Q  38 gatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattgacgtcggaagagtgaagtgaggcttgctctggcggagtgtgaaagac 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  12026928 gatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattgacgtcggaagagtgaagtgaggcttgctccggcggagtgtgaaaggc 12027027  T
Q  138 ------------atcctgggtgtcgggagcagagagcatgacgacgggagcggaggagggtgggatatcggagttaacctgagatgacatgctgcggtgg 225  Q
                 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12027028 ttcttgggggttgtcctgggtgtcgggagcagagagcatgacgacgggagtggaggagggtgggatatcggagttaacctgagatgacatgttgcggtgg 12027127  T
Q  226 tggtggtgatggt 238  Q
    |||||||| ||||    
T  12027128 tggtggtggtggt 12027140  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 239 - 372
Target Start/End: Complemental strand, 12026857 - 12026724
Alignment:
Q  239 tgaaataaagaactttcacgatgactttcaattagggtttggagaagattttctgcctgtgaataacgataattcttgcaaagatattccaatggacaaa 338  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12026857 tgaaataaggaagtttcacgatgactttcaattagggtttggagaagattttctgcctgtgaatgacgataattcttgcaaagatattccaatggacaaa 12026758  T
Q  339 aactctgtaccagaggaaaatgctgtgaacgacg 372  Q
    |||||||| |||||| ||||||||||||| ||||    
T  12026757 aactctgtcccagagaaaaatgctgtgaatgacg 12026724  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12026837 - 12026926
Alignment:
Q  1 tcgtgaaagttctttatttcatccaaaaacaccgaatgatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattg 90  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12026837 tcgtgaaacttccttatttcatccaaaaacaccgaatgatcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattg 12026926  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 595
Target Start/End: Original strand, 54631869 - 54631931
Alignment:
Q  533 agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtcc 595  Q
    |||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||    
T  54631869 agaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtcc 54631931  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 18188720 - 18188581
Alignment:
Q  84 aacattgacgtcggaagagtgaagtgaggcttgctctggcggagtgtgaaagacatcctg------------ggtgtcgggagcagagagcatgacgacg 171  Q
    ||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||| || ||            |||||||||||| |||||||||||||||    
T  18188720 aacatcgacgtcggaagagtgaagtgaagcttcctccggcggagtgtgaaagacgtcttgagggttgtcttgggtgtcgggagcggagagcatgacgacg 18188621  T
Q  172 ggagcggaggagggtgggatatcggagttaacctgagatg 211  Q
    | ||| ||||||| |||||| || |||||| |||||||||    
T  18188620 gaagcagaggaggctgggatgtcagagttagcctgagatg 18188581  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 533 - 601
Target Start/End: Original strand, 18189434 - 18189502
Alignment:
Q  533 agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttg 601  Q
    |||||||||||||||||||||| ||||| |||| |||||| | ||| |||| || ||||||||||||||    
T  18189434 agaagatgatggtcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttg 18189502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 52894938 - 52894863
Alignment:
Q  39 atcagaaggatcatctaacacctgggacccagcagagtgacgaacaacattgacgtcggaagagtgaagtgaggcttg 116  Q
    |||||||| |||| | ||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||| |||||    
T  52894938 atcagaagaatcaacgaacacctgg-acccagcagagtgaggaaca-cattgacgttggaagagtgaagtgaagcttg 52894863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 52895068 - 52895124
Alignment:
Q  384 tcaagttatgagattggagaacgttctggaaacgttaacttggtagaagggcacaac 440  Q
    |||||||||||| |||||||| |||||||||| ||||||||||| || |||||||||    
T  52895068 tcaagttatgagtttggagaaggttctggaaatgttaacttggttgaggggcacaac 52895124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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