View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_60 (Length: 290)
Name: NF3074_low_60
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 42054220 - 42054128
Alignment:
| Q |
181 |
gttctggtaaaaataaagaatttatttatgtattataagtttataaaaaccaacattagtacgtagatggtgtgtttgagaaataatgacgttgt |
275 |
Q |
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| T |
42054220 |
gttctggtaaaaataaagaatttatttatgtattataagtttataaaaaccaacattagt--gtagatggtgtgtttgagaaataatgacgttgt |
42054128 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42054567 - 42054495
Alignment:
| Q |
1 |
agctaatgggccgatgacaagttgctctaggttttcctatttaatcttaatttgcttcctaataattgtgcaa |
73 |
Q |
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| T |
42054567 |
agctaataggccgatgacaagttcttttaggttttcctatttaatcttaatttacttcctaataattgtgcaa |
42054495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 42054309 - 42054267
Alignment:
| Q |
92 |
caaggaaatgttaaagacttctttatttccaatgatagcaagc |
134 |
Q |
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| T |
42054309 |
caaggaaatgttaaagacttctttattttcaatgatagcaagc |
42054267 |
T |
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