View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_62 (Length: 287)
Name: NF3074_low_62
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 37601935 - 37601667
Alignment:
| Q |
17 |
aaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaattt |
116 |
Q |
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| T |
37601935 |
aaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaattt |
37601836 |
T |
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| Q |
117 |
aaacatcataaaaggagcacaatgcaaaattcatttatatggagtt-nnnnnnnnggaccttaaagcctctttcaatgaacttgacagcatataactcgc |
215 |
Q |
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| T |
37601835 |
aaacatcataaaaggagcacaatgcaaaattcatttatatggagttaaaaaaaaaagaccttaaagcctctttcaatgaacttgacagcatataactcgc |
37601736 |
T |
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| Q |
216 |
cactccatttttcccttataagctttgcaacaccaaagttacctgatccaatatctttaattatttcat |
284 |
Q |
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| T |
37601735 |
cactccatttttcccttataagctttgcaacaccaaagttacctgatccaatatctttaattatttcat |
37601667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 39410720 - 39410650
Alignment:
| Q |
17 |
aaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
87 |
Q |
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| T |
39410720 |
aaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatct |
39410650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 12309331 - 12309285
Alignment:
| Q |
24 |
acaatattgggatgcttcaatgacctatgatttataatctccctttg |
70 |
Q |
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| T |
12309331 |
acaatattgggatgcctcagtgatctatgatttataatttccctttg |
12309285 |
T |
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