View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_67 (Length: 262)

Name: NF3074_low_67
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_67
NF3074_low_67
[»] chr7 (29 HSPs)
chr7 (1-168)||(38229374-38229541)
chr7 (3-173)||(47254341-47254511)
chr7 (1-173)||(43543301-43543473)
chr7 (7-165)||(46160365-46160523)
chr7 (1-173)||(1599721-1599901)
chr7 (1-138)||(33981317-33981458)
chr7 (9-138)||(42832747-42832877)
chr7 (11-104)||(47253753-47253846)
chr7 (1-102)||(38226340-38226441)
chr7 (1-104)||(46159758-46159861)
chr7 (1-75)||(595258-595332)
chr7 (9-104)||(42832109-42832204)
chr7 (9-104)||(43543977-43544072)
chr7 (9-104)||(1600397-1600492)
chr7 (199-262)||(33981180-33981243)
chr7 (206-262)||(594776-594832)
chr7 (199-258)||(1599929-1599988)
chr7 (199-258)||(43543509-43543568)
chr7 (199-262)||(47254250-47254313)
chr7 (199-262)||(46160273-46160336)
chr7 (1-70)||(4925224-4925292)
chr7 (1-70)||(16277205-16277273)
chr7 (1-70)||(21729983-21730051)
chr7 (1-38)||(41407879-41407916)
chr7 (199-262)||(38229278-38229341)
chr7 (1-66)||(3415794-3415858)
chr7 (1-70)||(18994602-18994670)
chr7 (18-104)||(33980695-33980777)
chr7 (1-70)||(44458938-44459006)
[»] chr4 (40 HSPs)
chr4 (6-173)||(43593915-43594082)
chr4 (1-173)||(49647553-49647725)
chr4 (3-168)||(51943282-51943447)
chr4 (3-173)||(30112972-30113142)
chr4 (1-173)||(26918436-26918608)
chr4 (1-138)||(8080825-8080962)
chr4 (1-138)||(31623480-31623617)
chr4 (1-138)||(43938506-43938643)
chr4 (1-102)||(51942679-51942780)
chr4 (3-104)||(26919096-26919197)
chr4 (1-104)||(10657755-10657858)
chr4 (1-104)||(10871900-10872003)
chr4 (1-104)||(43590673-43590776)
chr4 (1-104)||(43939181-43939283)
chr4 (1-97)||(7111849-7111945)
chr4 (1-104)||(10657082-10657185)
chr4 (1-104)||(10871227-10871330)
chr4 (3-104)||(8079679-8079780)
chr4 (1-98)||(50791527-50791624)
chr4 (9-89)||(30113649-30113729)
chr4 (99-173)||(7112096-7112170)
chr4 (199-262)||(43591181-43591244)
chr4 (3-104)||(49646963-49647064)
chr4 (199-262)||(8080688-8080751)
chr4 (199-262)||(30113166-30113229)
chr4 (199-262)||(31623691-31623754)
chr4 (199-258)||(7112198-7112257)
chr4 (199-262)||(10657583-10657646)
chr4 (199-262)||(10871728-10871791)
chr4 (199-258)||(26918636-26918695)
chr4 (199-262)||(43938713-43938776)
chr4 (199-262)||(51943186-51943249)
chr4 (203-262)||(49647469-49647528)
chr4 (1-70)||(3035510-3035578)
chr4 (1-70)||(16664943-16665011)
chr4 (1-94)||(35825244-35825336)
chr4 (1-70)||(41041239-41041307)
chr4 (1-70)||(49969920-49969988)
chr4 (1-70)||(52447672-52447740)
chr4 (1-70)||(54919681-54919749)
[»] chr5 (25 HSPs)
chr5 (3-173)||(5100544-5100714)
chr5 (3-173)||(37250485-37250655)
chr5 (1-173)||(3035514-3035686)
chr5 (1-173)||(8525387-8525559)
chr5 (3-138)||(29640084-29640219)
chr5 (1-104)||(15525944-15526047)
chr5 (1-104)||(3034932-3035035)
chr5 (1-104)||(5101150-5101253)
chr5 (1-104)||(8524789-8524892)
chr5 (1-104)||(29639637-29639740)
chr5 (1-103)||(34859282-34859383)
chr5 (1-90)||(37251160-37251249)
chr5 (1-81)||(15525265-15525345)
chr5 (199-262)||(15525772-15525835)
chr5 (1-68)||(34858583-34858650)
chr5 (50-122)||(29390623-29390696)
chr5 (199-262)||(34858758-34858821)
chr5 (206-258)||(3035426-3035478)
chr5 (199-262)||(37250679-37250741)
chr5 (1-70)||(745278-745346)
chr5 (198-262)||(5100734-5100798)
chr5 (99-138)||(34858645-34858684)
chr5 (134-173)||(34858691-34858730)
chr5 (1-70)||(824518-824586)
chr5 (1-70)||(12499675-12499743)
[»] chr2 (22 HSPs)
chr2 (1-173)||(18248245-18248417)
chr2 (1-173)||(14453196-14453380)
chr2 (1-138)||(33180509-33180647)
chr2 (9-173)||(6320443-6320619)
chr2 (1-138)||(36601733-36601871)
chr2 (1-97)||(33179865-33179961)
chr2 (1-104)||(18247618-18247721)
chr2 (1-103)||(14453869-14453971)
chr2 (1-97)||(6321111-6321207)
chr2 (199-262)||(6320647-6320710)
chr2 (1-102)||(40494879-40494980)
chr2 (196-258)||(36601602-36601664)
chr2 (1-62)||(39160159-39160220)
chr2 (1-62)||(39208974-39209035)
chr2 (199-262)||(14453408-14453471)
chr2 (199-262)||(33180372-33180435)
chr2 (1-75)||(77284-77357)
chr2 (199-262)||(18248154-18248217)
chr2 (49-90)||(21191530-21191571)
chr2 (131-168)||(33180468-33180505)
chr2 (1-70)||(42080485-42080553)
chr2 (1-37)||(1054382-1054418)
[»] chr8 (28 HSPs)
chr8 (1-168)||(26950886-26951064)
chr8 (1-173)||(35021211-35021384)
chr8 (1-168)||(26920169-26920346)
chr8 (1-104)||(35021884-35021987)
chr8 (1-138)||(31640420-31640557)
chr8 (1-97)||(38363478-38363574)
chr8 (1-104)||(41670512-41670615)
chr8 (1-104)||(38362798-38362901)
chr8 (99-173)||(41671111-41671185)
chr8 (1-104)||(19141963-19142066)
chr8 (1-104)||(26950292-26950395)
chr8 (1-104)||(31641102-31641205)
chr8 (199-262)||(31640635-31640698)
chr8 (199-262)||(35021412-35021475)
chr8 (199-262)||(38363299-38363362)
chr8 (3-68)||(41671180-41671245)
chr8 (203-262)||(26950792-26950849)
chr8 (199-262)||(41671020-41671083)
chr8 (1-73)||(28085579-28085650)
chr8 (1-104)||(3850755-3850857)
chr8 (203-262)||(26920073-26920132)
chr8 (1-70)||(277055-277123)
chr8 (1-70)||(638726-638794)
chr8 (1-70)||(824532-824600)
chr8 (1-70)||(41545295-41545363)
chr8 (1-70)||(44256416-44256484)
chr8 (1-73)||(5587227-5587298)
chr8 (1-73)||(5587616-5587688)
[»] chr3 (36 HSPs)
chr3 (10-168)||(42164277-42164435)
chr3 (11-173)||(42879314-42879476)
chr3 (10-173)||(39131551-39131714)
chr3 (11-168)||(43862195-43862352)
chr3 (1-138)||(48073569-48073706)
chr3 (3-168)||(22979528-22979705)
chr3 (1-104)||(43861613-43861716)
chr3 (1-104)||(22978931-22979034)
chr3 (1-104)||(42164937-42165040)
chr3 (10-104)||(50936676-50936770)
chr3 (1-104)||(42878715-42878818)
chr3 (9-105)||(2228303-2228399)
chr3 (1-104)||(39130955-39131058)
chr3 (1-104)||(50937337-50937440)
chr3 (1-81)||(7042631-7042711)
chr3 (9-97)||(43358415-43358503)
chr3 (1-97)||(48072946-48073042)
chr3 (199-262)||(48073428-48073491)
chr3 (48-122)||(36465970-36466045)
chr3 (199-262)||(42164469-42164532)
chr3 (199-262)||(43862099-43862162)
chr3 (199-262)||(50936879-50936942)
chr3 (1-70)||(16009088-16009156)
chr3 (199-262)||(22979428-22979491)
chr3 (199-258)||(42879227-42879286)
chr3 (1-70)||(11121901-11121969)
chr3 (1-70)||(40906439-40906507)
chr3 (134-173)||(48073523-48073562)
chr3 (40-102)||(36471499-36471561)
chr3 (131-173)||(50936809-50936851)
chr3 (1-70)||(2218291-2218359)
chr3 (1-70)||(27126504-27126572)
chr3 (1-70)||(27321308-27321376)
chr3 (1-70)||(41101971-41102039)
chr3 (1-73)||(22731864-22731936)
chr3 (1-73)||(22732254-22732325)
[»] scaffold0217 (3 HSPs)
scaffold0217 (3-165)||(19566-19730)
scaffold0217 (1-104)||(20239-20342)
scaffold0217 (199-262)||(19771-19834)
[»] chr6 (14 HSPs)
chr6 (12-173)||(13868830-13868991)
chr6 (1-138)||(12504335-12504473)
chr6 (1-104)||(13868250-13868352)
chr6 (1-104)||(32561490-32561593)
chr6 (1-173)||(32560824-32561008)
chr6 (1-104)||(24160242-24160345)
chr6 (1-104)||(12503689-12503792)
chr6 (199-262)||(12504198-12504261)
chr6 (199-262)||(32561036-32561099)
chr6 (3-70)||(27438670-27438736)
chr6 (131-173)||(12504289-12504331)
chr6 (1-70)||(14104262-14104330)
chr6 (1-70)||(23580548-23580616)
chr6 (2-70)||(27782740-27782807)
[»] scaffold0014 (3 HSPs)
scaffold0014 (1-173)||(69793-69976)
scaffold0014 (199-262)||(70004-70067)
scaffold0014 (1-104)||(70577-70680)
[»] chr1 (7 HSPs)
chr1 (1-138)||(23260680-23260809)
chr1 (1-94)||(43847296-43847389)
chr1 (1-104)||(23260173-23260277)
chr1 (201-262)||(43846820-43846881)
chr1 (1-104)||(4639288-4639391)
chr1 (2-70)||(10773007-10773074)
chr1 (1-70)||(7153197-7153265)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-104)||(56938-57040)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38229541 - 38229374
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||| ||||||||| ||| || |||| ||    
T  38229541 tcttcttcccatcttgattgttcaattctctcgttccagaattgttgccgtttccaattatcgtgagaatcgttgtcgtccgttttatttcagacattgt 38229442  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgta 168  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38229441 gagatcgccattgtttccaaaagctatatccacgaattaacgctcaccttatgaaattcatgtttgta 38229374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 47254511 - 47254341
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||||||| || |||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  47254511 ttcttcccatcttgtttcttcaattctctcgttccagaattgtcgccgtttccaattatcgtgagaatcgttgtcgtccgtttgattccagacatcgtga 47254412  T
Q  103 gatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| ||||    
T  47254411 gatcgccattgtttccaaaagctatatccacgaattaatgctcaccttatgaaattcaagtttgtattagc 47254341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43543301 - 43543473
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  ||| |||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||| ||||||||||||| || |||| ||    
T  43543301 tcttcttctcattttgattgttcaattctctcgttccataactgccgccgtttccaattatcctgagaatcgttgtcgtccgtttgatttcagacattgt 43543400  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  43543401 gagatcgctattgttttcaaaagctatatccacgaattaacgttcaccttatgaaattcacgtttgtattagc 43543473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 46160523 - 46160365
Alignment:
Q  7 ttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagatc 106  Q
    |||||||||||||||||||||||||||||| | ||||| || ||||| ||||||| ||||||||||||||||||||||||||| || |||| |||||||     
T  46160523 ttccatcttgattgttcaattctctcgttctagaattgccgccgttttcaattatagtgagaatcgttgccgtccgtttgatttcagacatcgtgagatt 46160424  T
Q  107 gccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgttt 165  Q
    | |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  46160423 gtcattgtttccaaaagctacatccacaaattaaccctcaccttatgaaattcatgttt 46160365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 1599721 - 1599901
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||| |||||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||||| |||||| ||||||| |||| ||    
T  1599721 tcttcttttcatcttgattgttcaattctctcgtttcagaactgccgccgtttccaattatcgtgagaatcgttgccatccgttagattccagacatcgt 1599820  T
Q  101 ----gagatcgccattgtttccaaaagctatatccacgaattaacactcacc----ttatgaaattcatgtttgtaatagc 173  Q
        ||||||||||||||||||||||| |||||||||||||||| | |||||    |||||||||||| ||||||| ||||    
T  1599821 gatcgagatcgccattgtttccaaaagttatatccacgaattaatattcaccttaattatgaaattcacgtttgtattagc 1599901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 33981458 - 33981317
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttg---attccaaacat 97  Q
    ||||||||||||||||||| |||||||||||| ||| | ||||| |||||||||||| |||||||||||||||||  |||| ||||   |||||| ||||    
T  33981458 tcttctttccatcttgattcttcaattctctcattctagaattgtcgtcgtttccaactatcgtgagaatcgttgttgtccatttgaatattccagacat 33981359  T
Q  98 agtgag-atcgccattgtttccaaaagctatatccacgaatt 138  Q
     ||||| ||||   ||||||||||||||||||||||||||||    
T  33981358 tgtgagaatcggtgttgtttccaaaagctatatccacgaatt 33981317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 42832877 - 42832747
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgag-atcg 107  Q
    |||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||| ||| ||||| |||||||| | || | ||||| ||||    
T  42832877 ccatcttgattgttcaattctctcgttcgagaattgccgtcatttccaattatcgtgagaatcattgtcgtccttttgattctagacgttgtgagaatcg 42832778  T
Q  108 ccattgtttccaaaagctatatccacgaatt 138  Q
       ||||||||||||||||||||| ||||||    
T  42832777 atgttgtttccaaaagctatatccccgaatt 42832747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 47253753 - 47253846
Alignment:
Q  11 atcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga 104  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| || |||| ||||||    
T  47253753 atcttgattgttcaattctctccttccataattgctgtcgtttccaattatcgtgagaatcgttgtcgtccttttgatttcagacattgtgaga 47253846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 38226340 - 38226441
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||||||||||||||||| |||||||| |||||| ||||| |||||||| |||||||| |||||||| ||| ||||| ||||||| ||||||| ||    
T  38226340 tcttctttccatcttgattgttgaattctcttgttccagaattgccgtcgttttcaattatcatgagaatcattgtcgtccttttgatttcaaacattgt 38226439  T
Q  101 ga 102  Q
    ||    
T  38226440 ga 38226441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46159758 - 46159861
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  |||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||| | ||  ||||||| ||||||| ||    
T  46159758 tcttcttctcatcttgattgttcaattatcttgttccagaattgtcgtcgtttccaattatcgtgagaatcgttgtcatcattttgattgcaaacattgt 46159857  T
Q  101 gaga 104  Q
    ||||    
T  46159858 gaga 46159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 595332 - 595258
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttg 75  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  595332 tcttcttcccatcttgattgtttaattctctcgttccagaattgccttcgtttccaattatcgtgagaatcgttg 595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 42832109 - 42832204
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga 104  Q
    |||||||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||||||  ||| ||||| |||||||||| |||| ||||||    
T  42832109 ccatcttgattgttcagttctctcgttccagaattgtcgtcttttccaataatcgtgagaattattgtcgtccttttgattccagacattgtgaga 42832204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 43544072 - 43543977
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga 104  Q
    ||||||||||||||||||||||| |||||| ||||  |||| ||||||||||||||||||||||| | ||||| ||||||| || |||| ||||||    
T  43544072 ccatcttgattgttcaattctcttgttccagaattttcgtcatttccaattatcgtgagaatcgtcgtcgtccttttgatttcagacattgtgaga 43543977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 1600492 - 1600397
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga 104  Q
    |||||||||||||||||||||||| ||| | ||||| |||| ||||||||||||||||||||||| |  |||| || ||||||| |||| ||||||    
T  1600492 ccatcttgattgttcaattctctcattctagaattgccgtcatttccaattatcgtgagaatcgtcgttgtcctttagattccagacattgtgaga 1600397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 33981243 - 33981180
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||    
T  33981243 tgtcttctcttccataactttaaccaacctcacaccttgttcacaatctcaacaactgttcatt 33981180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 594776 - 594832
Alignment:
Q  206 tcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||    
T  594776 tcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 594832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 1599929 - 1599988
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    |||||||| ||||||||| |||| | |||||||| |||||||||||||||||||||||||    
T  1599929 tgtcttctattccataactttaatcgacctcacaccgtgttcacaatctcaacaaatgtt 1599988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 43543509 - 43543568
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    |||||||||||||||| | |||||| |||||||| |||||||||||||||||| ||||||    
T  43543509 tgtcttctcttccatagctttaaccgacctcacaccgtgttcacaatctcaactaatgtt 43543568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 47254313 - 47254250
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| || | ||||||||||||||||||||||||    
T  47254313 tgtcttctcttccatagctttaaccgacctcacaccgcggtcacaatctcaacaaatgttcatt 47254250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 46160336 - 46160273
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||||||| || |||||| |||  ||| |||||||||| ||||||||||||||||||    
T  46160336 tgtcttctcttccatgaccttaaccgaccatacaccgtgttcacagtctcaacaaatgttcatt 46160273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4925224 - 4925292
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| || | ||||||||||||||||||||    
T  4925224 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgccatttccaattatcgtgagaat 4925292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16277273 - 16277205
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| |||  ||||||||||||||||||||    
T  16277273 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgtaatttccaattatcgtgagaat 16277205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21729983 - 21730051
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| |||||||||||||| | |||||| | || || |||||||||||||||| ||||||||    
T  21729983 tcttctttccattttgattgttcaattttgtcgttcta-aactgtcgtcgtttccaattatagtgagaat 21730051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41407879 - 41407916
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttcca 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  41407879 tcttcttcccatcttgattgttcaattctctcgttcca 41407916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 38229341 - 38229278
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||||||||   |||||  |||||||| ||||||||||||||||| || ||||||||    
T  38229341 tgtcttctcttccatagttttaactgacctcacaccgtgttcacaatctcaataattgttcatt 38229278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3415858 - 3415794
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtga 66  Q
    |||||||||||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||    
T  3415858 tcttctttccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtga 3415794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18994670 - 18994602
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| |||||  ||  ||||||||||||||||||||    
T  18994670 tcttcttcccattttgattgttcaattttgtcgttcca-aattgctgtaatttccaattatcgtgagaat 18994602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 33980695 - 33980777
Alignment:
Q  18 ttgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga 104  Q
    ||||||||||||||||||| | ||||| | || |||||||||||||||    |||||| ||||| ||||||| || |||| ||||||    
T  33980695 ttgttcaattctctcgttcgagaattgccatcatttccaattatcgtg----tcgttgtcgtccttttgatttcagacattgtgaga 33980777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44459006 - 44458938
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  44459006 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 44458938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 43594082 - 43593915
Alignment:
Q  6 tttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagat 105  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  43594082 tttccatcttgattgttcaattctctcgttccagaattaccgtcgtttccaattatcgtgcgaatcgttgccgtccgtttgattccaaacatcgtgagat 43593983  T
Q  106 cgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||||| || |||||||   |||||||||||||||||||||||| ||||    
T  43593982 cgccattgtttccaaaagctatatctacaaattaacggccaccttatgaaattcatgtttgtattagc 43593915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 49647725 - 49647553
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||||| | ||||||||||| || |||| ||    
T  49647725 tcttcttcccatcttgattgttcaattctctcgttccagaattgtcgccgtttccaattatcgtgaaaatcgttgtcatccgtttgatttcagacatcgt 49647626  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  49647625 gagatcggcattgtttccaaaagctatatccacgaattaacgctcaccttatgaaattcatgtttgtattagc 49647553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 51943447 - 51943282
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||||||||| || ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| || |    
T  51943447 ttcttcccatcttgatcgtgcaattatctcgttccagaattgtcgtcgtttccaattatcgtgagaatcgttgccatccgtttgattccacacatcgtta 51943348  T
Q  103 gatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgta 168  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  51943347 gatcgccattttttccaaaagctatatccacgaattaacgctcaccttataaaattcaagtttgta 51943282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 30112972 - 30113142
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||| |||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||| ||||| |||||||| | |||| | ||    
T  30112972 ttcttcccattttgactgttcaattctctcgttccagaattgtcgttgtttccaattatcgtgagaatggttgtcgtccatttgattctagacatcgcga 30113071  T
Q  103 gatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||    
T  30113072 gatcgacattgtttccaaaagctaaatccacgaattaacgctcaccttatgaaatttatgtttgtattagc 30113142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 26918436 - 26918608
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  ||||||||||||||||||||||||||| | || ||    |||||||||||||||||||||||||||||||||||| |||| || |||| ||    
T  26918436 tcttcttctcatcttgattgttcaattctctcgttctagaactgcaaccgtttccaattatcgtgagaatcgttgccgtccgttagattacagacatcgt 26918535  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||  |||||| ||||    
T  26918536 gagatcgccattgtttccaaaagttatatccacgaattaacgttcaccttatgaaattcacatttgtattagc 26918608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8080962 - 8080825
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| || ||||| |||||||||||||||| |||||| |||||||||||||| |||| ||    
T  8080962 tcttctttccatcttgattgttcaattctcttgttccacaattgccgccgttttcaattatcgtgagaattgttgccatccgtttgattccagacatcgt 8080863  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||||||| | ||||||||||||| ||||||||||||||    
T  8080862 gagatcgtcgttgtttccaaaagttatatccacgaatt 8080825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 31623480 - 31623617
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||| |  ||||| |||||||||||||||||||||| ||| ||||||||||| |||| ||    
T  31623480 tcttcttcccatcttaattgttcaattctctcgttccagaattgccaccgttttcaattatcgtgagaatcgttgcggtctgtttgattccagacatcgt 31623579  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||||||| | |||||||||||||||||||| |||||||    
T  31623580 gagatcgtcgttgtttccaaaagctatatctacgaatt 31623617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 43938506 - 43938643
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||   ||| |||||||||||||||| ||||||||| |||||||||||||||| ||    
T  43938506 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgctattttcaattatcgtgagaatagttgccgtctgtttgattccaaacatcgt 43938605  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||||  | | ||||||||||||| ||||||||||||||    
T  43938606 gagactgtcgttgtttccaaaagttatatccacgaatt 43938643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 51942679 - 51942780
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||    
T  51942679 tcttcttcccatcttgattgttcaattctctcgttccagaattgtcgtcgtttccaattatcgtgagaatcgttgtcgtccttttgattccatacattgt 51942778  T
Q  101 ga 102  Q
    ||    
T  51942779 ga 51942780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 26919197 - 26919096
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| ||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||    
T  26919197 ttcttcccatctttattgttgaattctctcgttccagaattgtcgtcgtttccaattatcgtgagaatcgttgtcgtccttttgattccatacattgtga 26919098  T
Q  103 ga 104  Q
    ||    
T  26919097 ga 26919096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10657858 - 10657755
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||| |||||||| |||||| ||    
T  10657858 tcttcttcccatctacattgttcaattctctcgttccagaattgccgtcgtttccaattatcgtgagaatcgttgtagtccatttgattctaaacattgt 10657759  T
Q  101 gaga 104  Q
    ||||    
T  10657758 gaga 10657755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10872003 - 10871900
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||| |||||||| |||||| ||    
T  10872003 tcttcttcccatctacattgttcaattctctcgttccagaattgccgtcgtttccaattatcgtgagaatcgttgtagtccatttgattctaaacattgt 10871904  T
Q  101 gaga 104  Q
    ||||    
T  10871903 gaga 10871900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43590673 - 43590776
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||| ||| ||| | |||||||||| |||| ||    
T  43590673 tcttctttccatcttgattgttcaattctctcgtttcagaattgccgtcgtttccaattatcgtgataatcattgtcgttcttttgattccagacattgt 43590772  T
Q  101 gaga 104  Q
    ||||    
T  43590773 gaga 43590776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 43939283 - 43939181
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||||| |||||||||| |||| ||    
T  43939283 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgtcg-ttccagttatcgtgagaatcgttgtcgtccttttgattccagacattgt 43939185  T
Q  101 gaga 104  Q
    ||||    
T  43939184 gaga 43939181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7111849 - 7111945
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacat 97  Q
    |||||||  ||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  7111849 tcttcttctcatcttgattgttcaattctctcgttccacaactgccgccgtttccaattatcgtgagaatcgttgtcgtccgttagattccagacat 7111945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10657082 - 10657185
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||| | ||| | ||||||||||||||||| ||| |||||||| ||||| |||||||||| |||| ||    
T  10657082 tcttcttcccatcttgattgttcaattctctcgttcgagaatggccgtcgtttccaattatcttgataatcgttgtcgtccttttgattccagacattgt 10657181  T
Q  101 gaga 104  Q
    ||||    
T  10657182 gaga 10657185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10871227 - 10871330
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||| | ||| | ||||||||||||||||| ||| |||||||| ||||| |||||||||| |||| ||    
T  10871227 tcttcttcccatcttgattgttcaattctctcgttcgagaatggccgtcgtttccaattatcttgataatcgttgtcgtccttttgattccagacattgt 10871326  T
Q  101 gaga 104  Q
    ||||    
T  10871327 gaga 10871330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 8079679 - 8079780
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||||| ||||  || |||||||||| |||| ||||    
T  8079679 ttcttcccatcttgattgttcaattctctcgttccagaatttccgtcgtttcgaattatcgtgagaatcgctgccaaccttttgattccagacattgtga 8079778  T
Q  103 ga 104  Q
    ||    
T  8079779 ga 8079780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50791624 - 50791527
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacata 98  Q
    ||||||| | |||||||||||||||||||||||||  | |||||| || |||||||||||||||||||||||||| ||||| ||||||| || |||||    
T  50791624 tcttcttcctatcttgattgttcaattctctcgtttgagaattgatgttgtttccaattatcgtgagaatcgttgtcgtccttttgatttcacacata 50791527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 30113729 - 30113649
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgatt 89  Q
    |||| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||| ||||| |||||||    
T  30113729 ccattttgattgttcaattctctcgttccagaattgtcgttgtttccaattatcgtgagaatcattgtcgtccttttgatt 30113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 7112096 - 7112170
Alignment:
Q  99 gtgagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  7112096 gtgagatcgccattgtttccaacagttatatccacgaattaacgttcaccttatgaaattcacgtttgtattagc 7112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 43591244 - 43591181
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||    
T  43591244 tgtcttctcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 43591181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 49646963 - 49647064
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||||||| |||||||||||||  |||| | |||||  |||||||| ||||||||||| |||||||| ||||| |||||||||| |||| ||||    
T  49646963 ttcttcccatcttggttgttcaattctcctgttcaagaattgttgtcgtttctaattatcgtgaaaatcgttgtcgtccttttgattccagacattgtga 49647062  T
Q  103 ga 104  Q
    ||    
T  49647063 ga 49647064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 8080751 - 8080688
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| |||||||| ||||||||   |||||||||||||||||||||||||||    
T  8080751 tgtcttctcttccatagcgttaaccgacctcacactatgttcacaatctcaacaaatgttcatt 8080688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 30113166 - 30113229
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||||||    
T  30113166 tgtcttctcttccatagctttaactgacctcacaccgtgttcacaatctcaacaaatgttcatt 30113229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 31623691 - 31623754
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||||| || | |||||| |||||||| |||||||||||||||||||||||||||||    
T  31623691 tgtcttctcttccgtagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 31623754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 7112198 - 7112257
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    ||||||||  |||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  7112198 tgtcttcttatccatagctttaaccaacctcacaccgtgttcacaatctcaacaaatgtt 7112257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 10657646 - 10657583
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||| |||| | |||| | |||||||| |||||||||||||||||||||||||||||    
T  10657646 tgtcttctctttcatagctttaaacgacctcacaccgtgttcacaatctcaacaaatgttcatt 10657583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 10871791 - 10871728
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||| |||| | |||| | |||||||| |||||||||||||||||||||||||||||    
T  10871791 tgtcttctctttcatagctttaaacgacctcacaccgtgttcacaatctcaacaaatgttcatt 10871728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 26918636 - 26918695
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    |||||||||||||||| | |||||| |||||||| ||||||| |||||||||||||||||    
T  26918636 tgtcttctcttccatagcattaaccgacctcacaccgtgttcgcaatctcaacaaatgtt 26918695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 43938713 - 43938776
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||| ||||   |||||| |||||||| | |||||||||||||||||||||||||||    
T  43938713 tgtcttctctttcatagttttaaccgacctcacaccatgttcacaatctcaacaaatgttcatt 43938776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 51943249 - 51943186
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| || | ||||||||| ||||||||||||||    
T  51943249 tgtcttctcttccatagctttaaccgacctcacaccgcggtcacaatcttaacaaatgttcatt 51943186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 49647528 - 49647469
Alignment:
Q  203 ttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||| | |||||| |||||||| ||| || |||||||||||| |||||||||    
T  49647528 ttctcttccatagctttaaccgacctcacaccgtatttacaatctcaacagatgttcatt 49647469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3035578 - 3035510
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  3035578 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 3035510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16664943 - 16665011
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  16664943 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 16665011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 35825336 - 35825244
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaa 94  Q
    ||||||| |||| |||||||||||||| | |||||||  || || |||  ||| ||||| ||||||||||||| | ||| ||||||||||||||    
T  35825336 tcttcttcccattttgattgttcaattttgtcgttccc-aactgccgtatttttcaattttcgtgagaatcgtcgtcgttcgtttgattccaaa 35825244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41041307 - 41041239
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| ||||||||| |||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  41041307 tcttctttccattttgattgtttaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 41041239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 49969988 - 49969920
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  49969988 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 49969920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52447672 - 52447740
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  52447672 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 52447740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 54919681 - 54919749
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  54919681 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 54919749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 5100544 - 5100714
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| ||||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||| | ||||  |||    
T  5100544 ttcttcccatcttgattgttcaattatctcgttccagaattgccgccgtttccaattatcgtgagaattgttgccgtccgtttgattcaagacatcatga 5100643  T
Q  103 gatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  5100644 gatcgccattgtttccaaaagctatatccacgaattaacgctcaccttatgaaattcaagtttgtattagc 5100714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 37250485 - 37250655
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||| |||||||||| |||| ||||    
T  37250485 ttcttcccattttgattgttcaattctctcgttccagaattgtcgttgtttccaattatcgtgagaatcgttgtcgtccatttgattccagacatcgtga 37250584  T
Q  103 gatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  37250585 gatcgacattctttacaaaagctatatccacgaattaacgctcaccttatgaaattcatgtttgtattagc 37250655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 3035686 - 3035514
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  |||||||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||||| |||| || |||| ||    
T  3035686 tcttcttctcatcttgattgttcaattctctcgttccataactgccttcgttttcaattattgtgagaatcgttgccgtccgttagatttcagacatcgt 3035587  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||||||||||||||||| |||| |||||||||||||||||  | ||||||||||||||| ||||||| ||||    
T  3035586 gagatcgccattgtttcctaaagttatatccacgaattaacgtttaccttatgaaattcacgtttgtattagc 3035514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 8525559 - 8525387
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  |||||||||||||||||||||| |||||| || || || ||||||||||||||||||| ||||||| ||| |||| ||||||| |||| ||    
T  8525559 tcttcttctcatcttgattgttcaattctcttgttccagaactgccgccgtttccaattatcgtgaggatcgttgtcgttcgttagattccagacatcgt 8525460  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  8525459 gagatcgccattgtttccaacagttatatccacgaattaacgttcaccttatgaaattcacgtttgtattagc 8525387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 29640219 - 29640084
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| ||||||||||||||||||||||| |||||| ||||| || ||||| ||||||||||||||||||||||||||| ||||| |||| |||| ||||    
T  29640219 ttcttcccatcttgattgttcaattctcttgttccagaattgccgccgttttcaattatcgtgagaatcgttgccgtccatttgagtccagacatcgtga 29640120  T
Q  103 gatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||||| | ||||||||||||||||||||||||||||    
T  29640119 gatcgtcgttgtttccaaaagctatatccacgaatt 29640084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15526047 - 15525944
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||| ||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||    
T  15526047 tcttcttttcatcttgattgttcaattctctcgttctagaattgccgtcgttttcaattatcgtgagaatcgttgtcgtccatttgattccaaacattgt 15525948  T
Q  101 gaga 104  Q
    ||||    
T  15525947 gaga 15525944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3034932 - 3035035
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||| || ||||||| |||| ||    
T  3034932 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgtcgtttccaattatcgtgagaatcgttgtcatcctttagattccagacattgt 3035031  T
Q  101 gaga 104  Q
    ||||    
T  3035032 gaga 3035035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5101253 - 5101150
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||| |||||||| | |||| ||    
T  5101253 tcttcttcccatcttgattgttcaattctctcgttctataattttcgtcgtttccaattatcgtgagaatcgttgtcgtccttttgattctagacattgt 5101154  T
Q  101 gaga 104  Q
    ||||    
T  5101153 gaga 5101150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8524789 - 8524892
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||| || ||||||| |||| ||    
T  8524789 tcttcttctcatcttgactgttcaattctctcgttccagaattgtcgtcgtttccaattatcgtgaaaatcgttgtcgtcctttagattccagacattgt 8524888  T
Q  101 gaga 104  Q
    ||||    
T  8524889 gaga 8524892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29639637 - 29639740
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||| ||||||||||||| ||||||| || ||||| ||  ||||||||||||||||||| |||||||||||| |||||||||| |||| ||    
T  29639637 tcttcttcccatcatgattgttcaattatctcgtttcagaattgccgcggtttccaattatcgtgagagtcgttgccgtccttttgattccagacattgt 29639736  T
Q  101 gaga 104  Q
    ||||    
T  29639737 gaga 29639740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34859383 - 34859282
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||| | ||||| || ||||| |  |||||||||||||||||||||||| |||||||||| |||| ||    
T  34859383 tcttcttcccatcttgattgttcaattctctcgttctagaattgtcgccgttttcc-ttatcgtgagaatcgttgccgtccttttgattccagacattgt 34859285  T
Q  101 gag 103  Q
    |||    
T  34859284 gag 34859282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37251249 - 37251160
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattc 90  Q
    ||||||| |||||||||||||| |||||||| |||||| ||||| |||||||| |||||||||||||||||||||  |||| ||||||||    
T  37251249 tcttcttcccatcttgattgttaaattctcttgttccagaattgccgtcgttttcaattatcgtgagaatcgttgttgtccttttgattc 37251160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15525265 - 15525345
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtcc 81  Q
    ||||||| |||||||||||||||||||||||||||| | ||||| | ||||||||||||||| |||||||||||| |||||    
T  15525265 tcttcttcccatcttgattgttcaattctctcgttcgagaattgccatcgtttccaattatcttgagaatcgttgtcgtcc 15525345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 15525835 - 15525772
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||    
T  15525835 tgtcttctcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 15525772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34858583 - 34858650
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgaga 68  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||    
T  34858583 tcttcttcccatcttgattgttcaattctctcgtttcagaattgccgccgttttcaattatcgtgaga 34858650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 29390696 - 29390623
Alignment:
Q  50 gtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgag-atcgccattgtttccaaaa 122  Q
    |||||||||||||||||||||||||||||  ||||||||| || |||| ||||| |||||| ||||||||||||    
T  29390696 gtttccaattatcgtgagaatcgttgccgctcgtttgatttcagacatcgtgagaatcgccgttgtttccaaaa 29390623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 34858758 - 34858821
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||  | |||||| |||||||| ||||||||||||||||||| |||||||||    
T  34858758 tgtcttctcttccatcgcattaaccgacctcacaccgtgttcacaatctcaacagatgttcatt 34858821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 3035478 - 3035426
Alignment:
Q  206 tcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    ||||||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  3035478 tcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgtt 3035426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 37250679 - 37250741
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| | |||||| |||||| ||||||||||||||||||||||    
T  37250679 tgtcttctcttccatagctttaaccgatctcacaccgtgtt-acaatctcaacaaatgttcatt 37250741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 745346 - 745278
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  745346 tcttctttccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 5100734 - 5100798
Alignment:
Q  198 ctgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||||||||| | |||||  ||||||||  | | ||||||||||||||||||||||||    
T  5100734 ctgtcttctcttccatagctttaactgacctcacactgcggtcacaatctcaacaaatgttcatt 5100798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 34858645 - 34858684
Alignment:
Q  99 gtgagatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  34858645 gtgagatcgtcgttgtttccaaaagctatatccacgaatt 34858684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 34858691 - 34858730
Alignment:
Q  134 gaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  34858691 gaattaacacccaccttatgaaattcatgtttgtattagc 34858730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 824586 - 824518
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  824586 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 824518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12499675 - 12499743
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  12499675 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 12499743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 18248417 - 18248245
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||    ||||| ||||||||||||||||||||||||||||||| ||| || |||| ||    
T  18248417 tcttcttcccatcttgattgctcaattctctcgttccagaattgtttccgttttcaattatcgtgagaatcgttgccgtccgttttatttcagacattgt 18248318  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  18248317 gagatcgccattgtttccaaaagctatatccacgaattaacgctcaccttatgaaattcatgtttgtattagc 18248245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 14453196 - 14453380
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||  ||||| |||||||||| |||| ||    
T  14453196 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgtcgtttccatttatcgtgagaatcgttttcgtccatttgattccagacattgt 14453295  T
Q  101 gaga-tcgccattgtttccaaaagctatatccac-----------gaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||| |||   |||||||||||||||||||||||           |||||||| |||||| ||||||||||||||||||| ||||    
T  14453296 gagaatcgatgttgtttccaaaagctatatccacaaattgctcacgaattaacgctcaccatatgaaattcatgtttgtattagc 14453380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 33180647 - 33180509
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||  ||||| ||||||| || |||| ||    
T  33180647 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgtcgttttcaattatcgtgagaatcgttctcgtccatttgatttcagacattgt 33180548  T
Q  101 gaga-tcgccattgtttccaaaagctatatccacgaatt 138  Q
    |||| |||   ||||||||||||||||||||||| ||||    
T  33180547 gagattcggtgttgtttccaaaagctatatccacaaatt 33180509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 6320443 - 6320619
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga-tcg 107  Q
    ||||||| ||||||||||||| ||||| || ||||| ||| |||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||    
T  6320443 ccatctttattgttcaattctttcgttacagaattgccgttgtttccaattatcgtgagaatcgttgtcgtccatttgattccagacattgtgagaatcg 6320542  T
Q  108 ccattgtttccaaaagctatatccacgaatt-----------aacactcaccttatgaaattcatgtttgtaatagc 173  Q
       ||||||||||||||||||||||||||||           ||||| |||||||||||||||||||||||| ||||    
T  6320543 gttttgtttccaaaagctatatccacgaattgctcacgaactaacacccaccttatgaaattcatgtttgtattagc 6320619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36601871 - 36601733
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttc-caattatcgtgagaatcgttgccgtccgtttgattccaaacatag 99  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||  |||| ||||||||||||||| ||||| |||||||||| |||| |    
T  36601871 tcttcttcccatcttgattgttcaattctctcgtttcataattgtcgtcgtttcataattgtcgtgagaatcgttgtcgtccatttgattccagacattg 36601772  T
Q  100 tgag-atcgccattgtttccaaaagctatatccacgaatt 138  Q
    |||| ||||   ||| ||||||||||||||||||||||||    
T  36601771 tgagaatcggtgttg-ttccaaaagctatatccacgaatt 36601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33179865 - 33179961
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacat 97  Q
    ||||||| |||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  33179865 tcttcttcccatcttgattgttcaattctctcgttcgagaattgatgttgtttccaattatcgtgagaatcgttgtcgtccttttgattccagacat 33179961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 18247618 - 18247721
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||| |||||||| |||||| ||||| |||||||| ||||||||||||||||| ||| ||||| |||||||||| |||| ||    
T  18247618 tcttcttcccatcttgattgttgaattctcttgttccagaattgccgtcgtttgcaattatcgtgagaatcattgtcgtccttttgattccagacattgt 18247717  T
Q  101 gaga 104  Q
    ||||    
T  18247718 gaga 18247721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 14453971 - 14453869
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||| |||||||| | ||| | |||||||| ||||||||||||||||||||| ||||| |||||||||| |||| ||    
T  14453971 tcttcttcccatcttgattgttcaattttctcgttcgagaatcgtcgtcgttttcaattatcgtgagaatcgttgtcgtccttttgattccagacattgt 14453872  T
Q  101 gag 103  Q
    |||    
T  14453871 gag 14453869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6321207 - 6321111
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacat 97  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||| ||| ||||||||||||| |||||||||||| ||||| |||||||||| ||||    
T  6321207 tcttcttcccatcttgattgttcaattctcccgttcaagaattgccgttgtttccaattatcatgagaatcgttgtcgtccttttgattccagacat 6321111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 6320647 - 6320710
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  6320647 tgtcttctcttccatagctttaaccaacctcacaccgtgttcacaatctcaacaaatgttcatt 6320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 40494879 - 40494980
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  ||| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||||||| | ||||||||||||| || |||| ||    
T  40494879 tcttcttctcattttgattgttcatttctctcgttctagaactgccgtcgtttccaattatcgtgagaatcgtcgtcgtccgtttgatttcagacatcgt 40494978  T
Q  101 ga 102  Q
    ||    
T  40494979 ga 40494980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 36601664 - 36601602
Alignment:
Q  196 cactgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    ||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  36601664 cactgtcttctcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgtt 36601602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39160159 - 39160220
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatc 62  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| || ||||| ||||||||    
T  39160159 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgccgttttcaattatc 39160220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39209035 - 39208974
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatc 62  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| || ||||| ||||||||    
T  39209035 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgccgttttcaattatc 39208974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 14453408 - 14453471
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| ||||||| |||||||||||||| ||||||    
T  14453408 tgtcttctcttccatagctttaaccgacctcacaccgtgttcgcaatctcaacaaattttcatt 14453471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 33180435 - 33180372
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||| ||| | ||||||||||||||| | ||||||||||||||| |||||||||||    
T  33180435 tgtcttctcttctatagctttaaccaacctcacaccatgttcacaatctcaaaaaatgttcatt 33180372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 77357 - 77284
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttg 75  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| |||  |||||||||||||||||||| ||||    
T  77357 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgtaatttccaattatcgtgagaattgttg 77284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 18248217 - 18248154
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||||||||   |||||| ||||||||  |||||||||||||||| || ||||||||    
T  18248217 tgtcttctcttccatagttttaaccgacctcacacggtgttcacaatctcaataattgttcatt 18248154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 21191571 - 21191530
Alignment:
Q  49 cgtttccaattatcgtgagaatcgttgccgtccgtttgattc 90  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  21191571 cgttttcaattatcgtgagaatcgctgccgcccgtttgattc 21191530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 33180505 - 33180468
Alignment:
Q  131 cacgaattaacactcaccttatgaaattcatgtttgta 168  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  33180505 cacgaattaacgcccaccttatgaaattcatgtttgta 33180468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42080553 - 42080485
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| || || ||| |||||||||||| ||||||||    
T  42080553 tcttcttcccattttgattgttcaattttgtcgttcca-aactgtcgtagtttccaattatagtgagaat 42080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1054382 - 1054418
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttcc 37  Q
    |||||||||||| |||||||||||||||| |||||||    
T  1054382 tcttctttccattttgattgttcaattctgtcgttcc 1054418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26951064 - 26950886
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26951064 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgcagtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatcgt 26950965  T
Q  101 gagatcgccattgtttccaaaagctatatccacg-----------aattaacactcaccttatgaaattcatgtttgta 168  Q
    ||||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  26950964 gagatcgccgttgtttccaaaagctatatccacgaattgctcacgaattaacactcaccttatgaaattcatgtttgta 26950886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 35021211 - 35021384
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||| | ||| ||||| |||||||||||||||||| | ||| |||||||  | |||| ||    
T  35021211 tcttctttccatcttgattgttcaattctctcgtttcagaattgccatcgattccatttatcgtgagaatcgttgtcatccatttgattttagacattgt 35021310  T
Q  101 gag-atcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||| ||||   ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  35021311 gagaatcgatgttgtttccaaaagctatatccacgaattaacgctcactttatgaaattcatgtttgtattagc 35021384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26920346 - 26920169
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||| ||  ||||||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  26920346 tcttcttcccatattgattgttcaattctctcgttccagaattgccgcagtttccaattatcgtga-aatcgttgccgtccgtttgattccagacatcgt 26920248  T
Q  101 gagatcgccattgtttccaaaagctatatccacg-----------aattaacactcaccttatgaaattcatgtttgta 168  Q
    ||||| | | ||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  26920247 gagatggtcgttgtttccaaaagctatatccacgaattgctcacgaattaacactcaccttatgaaattcatgtttgta 26920169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35021987 - 35021884
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  35021987 tcttctttccatcttgattgttcaattctctcgttcgggaattgccgtcgtttccaattatcgtgagaatcgttgccgtccttttgattccaaacattgt 35021888  T
Q  101 gaga 104  Q
    ||||    
T  35021887 gaga 35021884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 31640420 - 31640557
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||| || |||||  ||||||||||| |||||||||||| ||||||||| || |||| ||    
T  31640420 tcttcttcccatcttgattgttcaattctcttgttccagaattgccgccgttttaaattatcgtgaaaatcgttgccgttcgtttgatttcagacatcgt 31640519  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||| ||| |  |||||||||||||||||||||||||||    
T  31640520 gaggtcgtcgctgtttccaaaagctatatccacgaatt 31640557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38363574 - 38363478
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacat 97  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  38363574 tcttcttcccatcttgattgttcaattctctcattccagaattgccgtcgtttccaattatcgtgagaatcgttgtcgtccatttgattccagacat 38363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41670512 - 41670615
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||    
T  41670512 tcttcttcccatcttgattgtttaattctctcgtttcagaattgccgtcgtttccaattatcgtgagaatcgttgtcgtccttttgattccagacattgt 41670611  T
Q  101 gaga 104  Q
    ||||    
T  41670612 gaga 41670615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38362798 - 38362901
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||| ||||| |||||||||| |||| ||    
T  38362798 tcttcttcccatcttgattgttcaattctctcgttcgagaattgccgtcgtttccaattaccttgagaatcgttgtcgtccttttgattccagacattgt 38362897  T
Q  101 gaga 104  Q
    ||||    
T  38362898 gaga 38362901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 41671185 - 41671111
Alignment:
Q  99 gtgagatcgccattgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  41671185 gtgagatcgccattgtttccaaaaggtatatccacgaattaacactcaccttatgaaattcaagtttgtattagc 41671111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19142066 - 19141963
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||| ||||||  |||| |||||||||| |||| ||    
T  19142066 tcttcttcccatcttgattgttcaattctctcgttcgagaattgccatcgtttccaattatcgtgagagtcgttgtggtccttttgattccagacattgt 19141967  T
Q  101 gaga 104  Q
    ||||    
T  19141966 gaga 19141963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26950292 - 26950395
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||| |  |||||||||||||||||||||||| |  ||||| ||||||||||||||| ||    
T  26950292 tcttcttcccatcttgattgttcaattctctagttccagaattgccaccgtttccaattatcgtgagaatcgatatcgtccttttgattccaaacattgt 26950391  T
Q  101 gaga 104  Q
    ||||    
T  26950392 gaga 26950395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31641205 - 31641102
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||| | ||  || |||||||||| |||| ||    
T  31641205 tcttttttccatcttgattgttcaattctctcgttccagaattgccgccgtttccaattatcgtgagattcgcttccaaccttttgattccagacattgt 31641106  T
Q  101 gaga 104  Q
    ||||    
T  31641105 gaga 31641102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 31640635 - 31640698
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||    
T  31640635 tgtcttctcttccatagcgttaactgacctcacaccgtgttcacaatctcaacaaatgttcatt 31640698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 35021412 - 35021475
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||    
T  35021412 tgtcttctcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 35021475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 38363362 - 38363299
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||    
T  38363362 tgtcttctcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 38363299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 41671245 - 41671180
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgaga 68  Q
    ||||| ||||||||||||||||||| |||||||||| |||||  || |||||||||||||||||||    
T  41671245 ttcttcccatcttgattgttcaattatctcgttccagaattgctgttgtttccaattatcgtgaga 41671180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 26950849 - 26950792
Alignment:
Q  203 ttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||    
T  26950849 ttctcttccataacgttaaccgacctcaca--gtgttcacaatctgaacaaatgttcatt 26950792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 41671083 - 41671020
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| |||||||| || | ||||||||||||||||||||||||    
T  41671083 tgtcttctcttccatagctttaaccgacctcacaccgcggtcacaatctcaacaaatgttcatt 41671020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28085650 - 28085579
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgt 73  Q
    |||||||||||| |||||||||||||| | |||||| | || || ||| |||||||||||| |||||||||||    
T  28085650 tcttctttccattttgattgttcaattttgtcgttcta-aactgtcgtagtttccaattatagtgagaatcgt 28085579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3850857 - 3850755
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||| |||||||||||||| | |||||||  || || ||   ||| ||||| ||||||||||||||| ||| |||||||||||||| || ||    
T  3850857 tcttcttcccattttgattgttcaattttgtcgttccc-aactgtcgcttttttcaattttcgtgagaatcgttgtcgttcgtttgattccaaatatcgt 3850759  T
Q  101 gaga 104  Q
    ||||    
T  3850758 gaga 3850755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 26920132 - 26920073
Alignment:
Q  203 ttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||| |||||||  ||||||| |||||||| |||| ||||||||| ||||||||||||||    
T  26920132 ttctattccatagtgttaaccgacctcacaccgtggtcacaatctgaacaaatgttcatt 26920073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 277055 - 277123
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  277055 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 277123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 638794 - 638726
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  638794 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 638726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 824600 - 824532
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  824600 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 824532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41545295 - 41545363
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  41545295 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 41545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44256416 - 44256484
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| || ||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  44256416 tcttctttccattttaattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 44256484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5587227 - 5587298
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgt 73  Q
    |||||||||||| |||||||||||||| | |||||||| || || |  |||||| | ||||||||||||||||    
T  5587227 tcttctttccattttgattgttcaattatgtcgttcca-aactgccaccgtttcaacttatcgtgagaatcgt 5587298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5587688 - 5587616
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgt 73  Q
    |||||||  ||| |||||||||||||| | |||||||| || |  || |||||||||||||||||| ||||||    
T  5587688 tcttcttcacattttgattgttcaattttgtcgttccaaaactaccgccgtttccaattatcgtgaaaatcgt 5587616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 42164277 - 42164435
Alignment:
Q  10 catcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagatcgcc 109  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |    
T  42164277 catcttgattgttcaattctctcgttccagaattgccgttgtttccaattatcgtgagaatcattgccgtccgtttgattccagacatcgtgagatcggc 42164376  T
Q  110 attgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgta 168  Q
    |||||||||||||| |||||||| |||||||  |||||||| |||||||||||||||||    
T  42164377 attgtttccaaaagatatatccaagaattaatgctcaccttgtgaaattcatgtttgta 42164435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 42879476 - 42879314
Alignment:
Q  11 atcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagatcgcca 110  Q
    ||||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||||    
T  42879476 atcttgattgttcaattctctcgtttcagaactgccgccgtttccaattatcgtgagaatcgttgtcgtccgtttgatttcagacatcgtgagatcgcca 42879377  T
Q  111 ttgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||    
T  42879376 ttgtttccaaaagctatatccacgaattaatgttcaccttatgaaattcatgtttgtattagc 42879314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 39131714 - 39131551
Alignment:
Q  10 catcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagatcgcc 109  Q
    ||||||||||||||||||||||||||||| || |  || |||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  39131714 catcttgattgttcaattctctcgttccagaacttccgccgtttccaattatcgtgataatcgttcccgtccgtttgattccatacatcgtgagatcgcc 39131615  T
Q  110 attgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||| |||||||||| ||||||||| |||||||  ||||||| ||||||||| ||||||| ||||    
T  39131614 attatttccaaaagttatatccacaaattaacgttcaccttgtgaaattcacgtttgtattagc 39131551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 43862352 - 43862195
Alignment:
Q  11 atcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagatcgcca 110  Q
    |||||||||||||||||||||| || || ||||| ||| |||| ||||||||||||||||||||||||||||||||||| || | || || |||||| ||    
T  43862352 atcttgattgttcaattctctcatttcagaattgtcgttgttttcaattatcgtgagaatcgttgccgtccgtttgatttcagagatcgtaagatcgaca 43862253  T
Q  111 ttgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgta 168  Q
    ||||||||||||| |||||||| |||||||  ||||||||||||||||||||||||||    
T  43862252 ttgtttccaaaagatatatccaagaattaaagctcaccttatgaaattcatgtttgta 43862195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 48073706 - 48073569
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||| || ||||| |||||||||||| ||| ||||||||||||||||||||| |||| ||    
T  48073706 tcttcttcccatcttgattgttcaattctcttgttccagaattgccgccgttttcaattatcgtgaaaattgttgccgtccgtttgattccagacatcgt 48073607  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||||||| |  |||||||||||||||||||||||||||    
T  48073606 gagatcgtcgctgtttccaaaagctatatccacgaatt 48073569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 22979705 - 22979528
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| |||||||||| ||||| |||||||||| |||| ||||    
T  22979705 ttcttgccatcttgattgttcaattctttcgttccagaattgtcgtagtttccaattatcgtaagaatcgttgtcgtccatttgattccagacattgtga 22979606  T
Q  103 g-atcgccattgtttccaaaagctatatc-----------cacgaattaacactcaccttatgaaattcatgtttgta 168  Q
    | ||||   ||||||||||||||||||||           ||||||||||| ||||||||||||||||||||||||||    
T  22979605 gaatcggtgttgtttccaaaagctatatccacggattactcacgaattaacgctcaccttatgaaattcatgtttgta 22979528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43861613 - 43861716
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||    
T  43861613 tcttcttcccatcttgattgttcaattctctcgttccagaattgccgtcgtttccaattatcgtgagaatcgttgtcgtccttttgattccagacattgt 43861712  T
Q  101 gaga 104  Q
    ||||    
T  43861713 gaga 43861716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 22978931 - 22979034
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||| |||||||||| |||| ||    
T  22978931 tcttcttctcatcttgattgttcaattctctcgttccaaaattgtcgtcgtttccaatcatcgtgagaatcgttgtcgtccttttgattccagacattgt 22979030  T
Q  101 gaga 104  Q
    ||||    
T  22979031 gaga 22979034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42165040 - 42164937
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| || |||||||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||    
T  42165040 tcttcttcccttcttgattgttcaattctctcgtttcataattatcgtcgttttcaattatcgtgagaatcgttgtcgtccttttgattccaaacattgt 42164941  T
Q  101 gaga 104  Q
    ||||    
T  42164940 gaga 42164937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 50936676 - 50936770
Alignment:
Q  10 catcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgaga 104  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||| |||||||||| |||| ||||||    
T  50936676 catcttgattgttcaattctctcgttccagaattgtcgtcgtttccaattatcgtgagaatcgttgttgtccatttgattccagacattgtgaga 50936770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 42878715 - 42878818
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||| |||||||| ||||| |||||||||| |||| ||    
T  42878715 tcttcttcccatcttgattgttcaattatctcgttctagaattgtcgtcgtttccaattatcgtgacaatcgttgtcgtccttttgattccagacattgt 42878814  T
Q  101 gaga 104  Q
    ||||    
T  42878815 gaga 42878818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 2228399 - 2228303
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagat 105  Q
    |||||||||||||||||||||||||||| | ||||| | ||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||||||    
T  2228399 ccatcttgattgttcaattctctcgttcgagaattgtcatcgtttccaattatcttgagaatcgttgtcgtccttttgattccagacattgtgagat 2228303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39130955 - 39131058
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||| || |||| || |||| ||    
T  39130955 tcttcttcccatcttgattgttcaattctctcattccagaattgccgtcgtttctaattatcgtgagaatcgttgtcgtcctttagatttcagacattgt 39131054  T
Q  101 gaga 104  Q
    ||||    
T  39131055 gaga 39131058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50937440 - 50937337
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  ||||||||||||||||||||||||||| | ||||| |||||||||| |||||| |||||||||||| ||||| |||||||||| |||| ||    
T  50937440 tcttcttctcatcttgattgttcaattctctcgttcgagaattgccgtcgtttcctattatcttgagaatcgttgtcgtccttttgattccagacattgt 50937341  T
Q  101 gaga 104  Q
    ||||    
T  50937340 gaga 50937337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7042631 - 7042711
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtcc 81  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||| |||| |||||    
T  7042631 tcttcttcccatcttgattgttcaattctctcattcaagaattgccgtcgtttccaattatcgtgagaattgttgtcgtcc 7042711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 43358503 - 43358415
Alignment:
Q  9 ccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacat 97  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||| |||||||| |||||||||||| ||||| || ||||||| ||||    
T  43358503 ccatcttgattgttcaattatctcgttccagaattgtcgtcgttttcaattatcatgagaatcgttgtcgtcctttcgattccagacat 43358415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 48072946 - 48073042
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacat 97  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||| ||| ||||  || |||||||||| ||||    
T  48072946 tcttttttccatcttgattgttcaattctctcgttccagaattgccgccgtttccaattattgtgagattcgctgccaaccttttgattccagacat 48073042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 48073491 - 48073428
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  48073491 tgtcttttcttccatagcgttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 48073428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 36465970 - 36466045
Alignment:
Q  48 tcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgag-atcgccattgtttccaaaa 122  Q
    ||||||||||||||||||||||||| ||||| |||||||||| || |||| ||||| |||||| ||||||||||||    
T  36465970 tcgtttccaattatcgtgagaatcgctgccgcccgtttgatttcagacatcgtgagaatcgccgttgtttccaaaa 36466045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 42164469 - 42164532
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||| ||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||    
T  42164469 tgtcttatcttccatagctttaaccgacctcacaccgtgttcacaatctcaacaaatgttcatt 42164532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 43862162 - 43862099
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||||||    
T  43862162 tgtcttctcttccatagctttaactgacctcacaccgtgttcacaatctcaacaaatgttcatt 43862099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 50936879 - 50936942
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||| ||||||||  ||||||||||||||||||||||||||||    
T  50936879 tgtcttctcttccatagctttaaccgacctcacactgtgttcacaatctcaacaaatgttcatt 50936942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16009088 - 16009156
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| |||||||||||||| | |||||||| ||||| |||  ||||||||||||||||||||    
T  16009088 tcttctttccattttgattgttcaattttgtcgttcca-aattgccgtaatttccaattatcgtgagaat 16009156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 22979491 - 22979428
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||| |||||||| | |||||||||||||||   |||| ||||||||||||||||||||||    
T  22979491 tgtcttcacttccatagctttaaccaacctcacacaatgtttacaatctcaacaaatgttcatt 22979428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 42879286 - 42879227
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgtt 258  Q
    |||||||||||||||| | |||| | |||||||| |||||||||||||||||| ||||||    
T  42879286 tgtcttctcttccatagctttaatcgacctcacaccgtgttcacaatctcaactaatgtt 42879227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11121901 - 11121969
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  11121901 tcttctttccattttgattgttcaattatgtcgttcca-aattgccgcaatttccaattatcgtgagaat 11121969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40906439 - 40906507
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  40906439 tcttctttccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 40906507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 48073562 - 48073523
Alignment:
Q  134 gaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  48073562 gaattaacactcaccttataaaattcatgtttgtattagc 48073523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 36471561 - 36471499
Alignment:
Q  40 aattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| || ||||| |||||||||||||||| | ||||| ||||||||||||| |||| ||||    
T  36471561 aattgccgccgttttcaattatcgtgagaattgctgccgcccgtttgattccagacattgtga 36471499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 50936809 - 50936851
Alignment:
Q  131 cacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||    
T  50936809 cacgaattaacgctcaccttatgaaattcatgttcgtattagc 50936851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2218291 - 2218359
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  2218291 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 2218359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27126504 - 27126572
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  27126504 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 27126572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27321308 - 27321376
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||||| |||||||||||||| | |||||||| ||||| ||   ||| ||||||||||||||||    
T  27321308 tcttctttccattttgattgttcaattttgtcgttcca-aattgccgcaattttcaattatcgtgagaat 27321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41101971 - 41102039
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||  ||||| |||  ||||||||||||||||||||    
T  41101971 tcttcttcccattttgattgttcaattttgtcgttcc-gaattgccgtaatttccaattatcgtgagaat 41102039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22731864 - 22731936
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgt 73  Q
    |||||||  ||| |||||||||||||| | |||||||| || |  || |||||||||||||||||| ||||||    
T  22731864 tcttcttcacattttgattgttcaattttgtcgttccaaaactaccgccgtttccaattatcgtgaaaatcgt 22731936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22732325 - 22732254
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgt 73  Q
    |||||||||||| |||||||||||||| | |||||||| || || |  |||||| | ||||||||||||||||    
T  22732325 tcttctttccattttgattgttcaattatgtcgttcca-aactgccaccgtttcaacttatcgtgagaatcgt 22732254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 19566 - 19730
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtga 102  Q
    ||||| |||||||||||||||||||||||||||  | ||||| ||| ||||||||||||| |||||||||||| |||||||||||||||| |||| ||||    
T  19566 ttcttcccatcttgattgttcaattctctcgttttagaattgccgttgtttccaattatcatgagaatcgttgtcgtccgtttgattccagacatcgtga 19665  T
Q  103 gatcgccattgtttccaaaag--ctatatccacgaattaacactcaccttatgaaattcatgttt 165  Q
     |||| |||||||||||||||   ||||||||||||||||  |||||||||||||||||||||||    
T  19666 tatcgacattgtttccaaaagatatatatccacgaattaatgctcaccttatgaaattcatgttt 19730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 20342 - 20239
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| ||| ||||| |||||||||| |||| ||    
T  20342 tcttcttcccatcttgattgttcaattctctcgttccataatttccgtcgtttccaattatcgagagaatcattgtcgtccttttgattccagacattgt 20243  T
Q  101 gaga 104  Q
    ||||    
T  20242 gaga 20239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 19771 - 19834
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    ||||||| |||||||| | |||| | |||||||| |||||||||||||||||||||||||||||    
T  19771 tgtcttcccttccatagctttaatcgacctcacaccgtgttcacaatctcaacaaatgttcatt 19834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 13868991 - 13868830
Alignment:
Q  12 tcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagtgagatcgccat 111  Q
    ||||||||||||||||||||||||||| || ||  | ||||||||||||| ||||||||| ||||||||| || ||||||| |||| |||||||||||||    
T  13868991 tcttgattgttcaattctctcgttccagaactgctgccgtttccaattattgtgagaatcattgccgtccattagattccagacatcgtgagatcgccat 13868892  T
Q  112 tgtttccaaaagctatatccacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    |||||||||||| ||||||||||||||||   ||||||||||||||||| ||||||| ||||    
T  13868891 tgtttccaaaagttatatccacgaattaatgttcaccttatgaaattcacgtttgtattagc 13868830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 12504473 - 12504335
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||||||| || ||||||||||| |||||||| | |||||  ||||||||||||||||||||||||| ||||||||| |||||||| |||| | ||    
T  12504473 tcttctttccattttaattgttcaattatctcgttcgagaattgcagtcgtttccaattatcgtgagaatcattgccgtccttttgattctaaacgttgt 12504374  T
Q  101 gag-atcgccattgtttccaaaagctatatccacgaatt 138  Q
    ||| ||||   ||||||||||||||||||||| ||||||    
T  12504373 gagaatcgatgttgtttccaaaagctatatccccgaatt 12504335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13868250 - 13868352
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| |||| ||    
T  13868250 tcttcttcccatcttgattgttcaattctct-gttccagaattgccgtcgttttcaattatcgtgagaatcgttgtcgtccttttgattccagacattgt 13868348  T
Q  101 gaga 104  Q
    ||||    
T  13868349 gaga 13868352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32561593 - 32561490
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| | |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||| |||| ||||| |||| ||    
T  32561593 tcttcttccgatcttgattgttcaattctctcgttccagaattgccgtcgtttacaattatcgtgagaatcgttgtcgtccttttggttccagacattgt 32561494  T
Q  101 gaga 104  Q
    ||||    
T  32561493 gaga 32561490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32560824 - 32561008
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||| |||||| ||||||||||||||| ||||| ||||  ||| || ||||||||||||||||| ||||| |||||||||| |||| ||    
T  32560824 tcttcttcccatcttaattgtttaattctctcgttccagaattgtcgtcacttctaaatatcgtgagaatcgttgtcgtccttttgattccagacattgt 32560923  T
Q  101 gag-atcgccattgtttccaaaagctatatc-----------cacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
     || ||||   ||||||||||||||||||||           ||||||||||| |||||||||||||||||||||||||| ||||    
T  32560924 aagaatcggtgttgtttccaaaagctatatccacaaattgctcacgaattaacgctcaccttatgaaattcatgtttgtattagc 32561008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24160242 - 24160345
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||||||  ||||||||||||||| ||||||| ||| | |||||  ||||||||||||||||||| ||||||||||||||| |||||||||| |||| ||    
T  24160242 tcttcttctcatcttgattgttcatttctctcattcaagaattgttgtcgtttccaattatcgtgtgaatcgttgccgtccttttgattccagacattgt 24160341  T
Q  101 gaga 104  Q
    ||||    
T  24160342 gaga 24160345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12503689 - 12503792
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||| |||||  ||  ||||  |||||||||| |||| ||    
T  12503689 tcttcttcccatcttgattgttcaattctcttgttccagaattgccgtcgtttccaataatcgtaagaattattatcgtcattttgattccagacattgt 12503788  T
Q  101 gaga 104  Q
    ||||    
T  12503789 gaga 12503792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 12504261 - 12504198
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||| ||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||    
T  12504261 tgtcttctattccataactttaaccaacttcacaccgtattcacaatctcaacaaatgttcatt 12504198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 32561036 - 32561099
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| | |||||  ||||||||  || |||||||||||||||||||||||||    
T  32561036 tgtcttctcttccatagctttaacagacctcacactgtattcacaatctcaacaaatgttcatt 32561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 27438670 - 27438736
Alignment:
Q  3 ttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||||||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  27438670 ttctttccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 27438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 12504331 - 12504289
Alignment:
Q  131 cacgaattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||||||| || ||||||||||||||||||||||| ||||    
T  12504331 cacgaattaacgctgaccttatgaaattcatgtttgtattagc 12504289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14104262 - 14104330
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  14104262 tcttcttaccattttgattgttcaattttatcgttcca-aattgccgcaatttccaattatcgtgagaat 14104330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23580548 - 23580616
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  23580548 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 23580616  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 27782740 - 27782807
Alignment:
Q  2 cttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||||||| |||||||||||||| | |||||||| ||||| ||   ||| ||||||||||||||||    
T  27782740 cttctttccattttgattgttcaattttgtcgttcca-aattgccgcaattttcaattatcgtgagaat 27782807  T

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Target: scaffold0014 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 69793 - 69976
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||| || ||||| ||||||||||||||||| | |||||||||||||||||| |||| ||    
T  69793 tcttcttcccatcttgattattcaattctctcgtttcaaaattgccgccgttttcaattatcgtgagaatcatcgccgtccgtttgattccagacatcgt 69892  T
Q  101 gagatcgccattgtttccaaaagctatatccacg-----------aattaacactcaccttatgaaattcatgtttgtaatagc 173  Q
    ||||||| |  ||||| |||||||||||||||||           ||||||| |||||||||||||||||||||||||| ||||    
T  69893 gagatcgtcgctgttttcaaaagctatatccacgaatttttcacgaattaacgctcaccttatgaaattcatgtttgtattagc 69976  T

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Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 70004 - 70067
Alignment:
Q  199 tgtcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||    
T  70004 tgtcttctcttccatagcgttaaccgccctcacattgtgttcacaatctcaacaaatgttcatt 70067  T

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Target: scaffold0014; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 70680 - 70577
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| ||||||  |||||||||||||||| || || ||||| |||||||| ||||||| || ||||||  |||| ||| |||||||||| |||| ||    
T  70680 tcttcttcccatctaaattgttcaattctctcatttcagaattgtcgtcgttttcaattattgtaagaatcactgccttccttttgattccagacattgt 70581  T
Q  101 gaga 104  Q
    ||||    
T  70580 gaga 70577  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 23260809 - 23260680
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||        |||||||||||||||||||||||  ||| ||||||||||| | || ||    
T  23260809 tcttcttcccatcttgattgttcaattctctcgttccagaattg--------tccaattatcgtgagaatcgttgttgtctgtttgattccagatatcgt 23260718  T
Q  101 gagatcgccattgtttccaaaagctatatccacgaatt 138  Q
     |||||||| ||||||||||||||||||||||||||||    
T  23260717 tagatcgccgttgtttccaaaagctatatccacgaatt 23260680  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 43847389 - 43847296
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaa 94  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  43847389 tcttcttcccatctcgattgttcaattctctcgttccagaattgccgtcatttccaattatcgtgagaatcgttgtcgtccttttgattccaaa 43847296  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 23260173 - 23260277
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcg-tttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatag 99  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| || || |||||||||||||||| |||||||| ||||| ||||||| || |||| |    
T  23260173 tcttctttccatcttgatttttcaattctctcgttccagaattgccgccgttttccaattatcgtgataatcgttgtcgtccttttgatttcagacattg 23260272  T
Q  100 tgaga 104  Q
    |||||    
T  23260273 tgaga 23260277  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 43846820 - 43846881
Alignment:
Q  201 tcttctcttccataacgttaaccaacctcacatcgtgttcacaatctcaacaaatgttcatt 262  Q
    |||||||||||||| | |||||| |||||||| | |||||||||||||||||||||||||||    
T  43846820 tcttctcttccatagctttaaccgacctcacaccatgttcacaatctcaacaaatgttcatt 43846881  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4639288 - 4639391
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||| ||||   ||||| ||||||||||||| ||| ||  | ||||||| || |||| ||    
T  4639288 tcttcttcccatcttgattgttcaattctcccgttccagaattgtcgtcacctccaaatatcgtgagaatcattgtcgaacttttgatttcagacattgt 4639387  T
Q  101 gaga 104  Q
    ||||    
T  4639388 gaga 4639391  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 10773007 - 10773074
Alignment:
Q  2 cttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    |||||| |||| |||||||||||||| | |||||||| ||||| |||  ||||||||||||||||||||    
T  10773007 cttcttcccattttgattgttcaattttgtcgttcca-aattgccgtaatttccaattatcgtgagaat 10773074  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7153197 - 7153265
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaat 70  Q
    ||||||| |||| |||||||||||||| | |||||||| ||||| ||   ||||||||||||||||||||    
T  7153197 tcttcttcccattttgattgttcaattttgtcgttcca-aattgccgcaatttccaattatcgtgagaat 7153265  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 57040 - 56938
Alignment:
Q  1 tcttctttccatcttgattgttcaattctctcgttccataattgacgtcgtttccaattatcgtgagaatcgttgccgtccgtttgattccaaacatagt 100  Q
    |||| ||||||| |||||||||||||| | |||||||| ||||| ||   ||| ||||| || |||||||||| | ||| |||||||||||||| || ||    
T  57040 tcttgtttccattttgattgttcaattttgtcgttcca-aattgccgcatttttcaattttcatgagaatcgtcgtcgttcgtttgattccaaatatcgt 56942  T
Q  101 gaga 104  Q
    ||||    
T  56941 gaga 56938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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