View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_7 (Length: 616)

Name: NF3074_low_7
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_7
NF3074_low_7
[»] chr1 (6 HSPs)
chr1 (241-560)||(51804681-51804988)
chr1 (13-243)||(51804409-51804642)
chr1 (13-126)||(51808358-51808472)
chr1 (364-422)||(51808713-51808772)
chr1 (13-57)||(51780640-51780684)
chr1 (13-57)||(51768157-51768201)
[»] scaffold0710 (1 HSPs)
scaffold0710 (13-61)||(7284-7332)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 241 - 560
Target Start/End: Original strand, 51804681 - 51804988
Alignment:
Q  241 atgcaagagatcatttggcatgtgctttgtaaccccaagcagtggctgttaatgacaacaagaccattcttgtagaagctaagctatccattcatccata 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||     ||||||||||||||    
T  51804681 atgcaagagatcatttggcatgtgctttgtaaccccaagcagtggctgttaatgacaacaagaccattcttttagaaggta-----tccattcatccata 51804775  T
Q  341 gggaggactgaattataaaatttaatgaagggagattattgttatggttgaaaaaggatggaaagaaaagtaaatagaaagactaaagcaaatttagtac 440  Q
    ||    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51804776 gg----actgaattataaa-tttaatgaagggagattattgttatggttgaaaaaggatggaaagaaaagtaaatagaaagactaaagcaaatttagtac 51804870  T
Q  441 atgaaagttcttaagaaaatttcaaattgtattcagaccattcaaatatttaatattcaaatgtgaatcttttccaatcagttagtttaaataattggca 540  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51804871 atgaaagttctt-agaaaatttcaaattgtattcagaccattcaaatatttaatattcaaatgtgaatcttttccaatcagttagtttaaataattggca 51804969  T
Q  541 tgcattaacatcaataatgg 560  Q
    |||||| |||||||||||||    
T  51804970 tgcatt-acatcaataatgg 51804988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 51804409 - 51804642
Alignment:
Q  13 aatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaagcttagatgaatataacaagtccactattagagcataacataaagaatttaa 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51804409 aatatcagaaaactttcaaatatatcgagcaggcaatttctcaagcatgcttagatgaatagaacaagtccactcttagagcataacataaagaatttaa 51804508  T
Q  113 gatataacttacaagagatgacatacaacaagcaatggaatgacagatgtaattgaacgtatgctttgaaa-gagggactttgtggac--aactcctcat 209  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||| ||||||||| ||| ||  ||| ||||||    
T  51804509 gatataacttactagagatgacatacaacaagcaatgatatgacagatgtaattgaagatatgctttgaaacgagggacttcgtgaacaaaacacctcat 51804608  T
Q  210 cacagttttggcttcattgatattagctcggatg 243  Q
    || |||||||| ||||||||||||||||||||||    
T  51804609 catagttttggtttcattgatattagctcggatg 51804642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 51808358 - 51808472
Alignment:
Q  13 aatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaagcttagatgaatataacaagtccactattagagcataa-cataaagaattta 111  Q
    |||||||||||||||| |||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||||| ||||||  | ||||||||||    
T  51808358 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta 51808457  T
Q  112 agatataacttacaa 126  Q
    ||||||||| |||||    
T  51808458 agatataacatacaa 51808472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 51808713 - 51808772
Alignment:
Q  364 aatgaagggagattattgttatggttgaaaa-aggatggaaagaaaagtaaatagaaaga 422  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| || |||||||||||||    
T  51808713 aatgaagggagattattgttatggtagaaaagaagatggaaagcaatgtaaatagaaaga 51808772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 51780640 - 51780684
Alignment:
Q  13 aatatcagaaaactttgaaatatatcgagcaggcaatttctcaag 57  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||    
T  51780640 aatatcagaaaactttcaaatatctcgagcaggcaatttcacaag 51780684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 51768157 - 51768201
Alignment:
Q  13 aatatcagaaaactttgaaatatatcgagcaggcaatttctcaag 57  Q
    |||||||||||||||| |||||||||||  |||| ||||||||||    
T  51768157 aatatcagaaaactttcaaatatatcgaaaaggcgatttctcaag 51768201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 7284 - 7332
Alignment:
Q  13 aatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaag 61  Q
    |||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  7284 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaag 7332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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