View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_70 (Length: 250)
Name: NF3074_low_70
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_70 |
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| [»] scaffold0037 (3 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 31449 - 31696
Alignment:
| Q |
13 |
aaaatattgcagaccagaattcacgttcaattataagtctttaaaacagagaaaaaggtggccaatgtgccactgttcttctttacgatgaattc----- |
107 |
Q |
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| T |
31449 |
aaaatattgcagaccagaattcacgttcaattataagtctttaaaacagagaaaaaggtggccaatgtgccactgttcttctttacgatgaattcaaaat |
31548 |
T |
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| Q |
108 |
-----aaaaggatttttactttttatgttatcttgtgttttctaattcatagggattgggagtaattcaataaaactcaactgatgcgaacggtttgcat |
202 |
Q |
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| T |
31549 |
gattcaaaaggatttttactttttatgttatcttgtgttttctaattcatagggattgggagtaattcaataaaactcaactgatgcgaacggtttgcat |
31648 |
T |
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| Q |
203 |
ctctttcaacatgtagtcatcaacaagcttctaacagaatcagcagtt |
250 |
Q |
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| T |
31649 |
ctctttcaacatgtagtcatcaacaagcttctaacagaatcagcagtt |
31696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 104082 - 103994
Alignment:
| Q |
15 |
aatattgcagaccagaattcacgttcaattataagtctttaaaacagagaaaaaggtggccaatgtgccactgttcttctttacgatgaattcaaaa |
111 |
Q |
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| T |
104082 |
aatattgcagaccggaattcacgttcaattacaagtctttaaaacagagaaaaaggtagccaa--------tgttcttctttacgatgaattcaaaa |
103994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 103840 - 103784
Alignment:
| Q |
194 |
ggtttgcatctctttcaacatgtagtcatcaacaagcttctaacagaatcagcagtt |
250 |
Q |
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| T |
103840 |
ggtttgcatctctttcaacatgtggtcatcaacaagctactaacagaagcagcagtt |
103784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 7892497 - 7892328
Alignment:
| Q |
81 |
gccactgttcttctttacgatgaattcaaaa----------ggatttttactttttatgttatcttgtgttttctaattcatagggattgggagtaattc |
170 |
Q |
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| T |
7892497 |
gccactgttcttctttacgatgaattcaaaatgactcataaggattttt-ctgtttatgttaacttgtgtttactaattcatagggattgggagtaattc |
7892399 |
T |
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| Q |
171 |
aataaaactcaactgatgcgaacggtttgcatctctttcaacatgtagtcatcaacaagcttctaacagaa |
241 |
Q |
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| T |
7892398 |
aataaaactcaacatatgctaacggtttgcatctctttcaacatgtagtcatcaataagcttctaacagaa |
7892328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 18444964 - 18444906
Alignment:
| Q |
15 |
aatattgcagaccagaattcacgttcaattataagtctttaaaacagagaaaaaggtggc |
74 |
Q |
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| T |
18444964 |
aatattgcagaacggaattcacgttaaattg-aagtctttataacagagaaaaaggtggc |
18444906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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