View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_74 (Length: 248)

Name: NF3074_low_74
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_74
NF3074_low_74
[»] chr3 (3 HSPs)
chr3 (18-238)||(3180622-3180859)
chr3 (205-234)||(21479086-21479115)
chr3 (206-238)||(24205110-24205142)
[»] chr5 (3 HSPs)
chr5 (75-201)||(20946556-20946682)
chr5 (34-77)||(20959650-20959693)
chr5 (205-240)||(31084285-31084320)
[»] scaffold0024 (1 HSPs)
scaffold0024 (172-233)||(18137-18198)
[»] chr7 (2 HSPs)
chr7 (122-160)||(25956525-25956563)
chr7 (209-237)||(1885532-1885560)
[»] chr6 (5 HSPs)
chr6 (114-160)||(26178564-26178610)
chr6 (178-235)||(4323904-4323961)
chr6 (122-158)||(785384-785420)
chr6 (172-236)||(17168860-17168924)
chr6 (122-158)||(34197199-34197235)
[»] chr4 (1 HSPs)
chr4 (127-161)||(39619047-39619081)
[»] chr1 (1 HSPs)
chr1 (205-235)||(22881678-22881708)
[»] scaffold0504 (1 HSPs)
scaffold0504 (206-238)||(8783-8815)
[»] scaffold0122 (1 HSPs)
scaffold0122 (122-158)||(10247-10283)
[»] scaffold0007 (1 HSPs)
scaffold0007 (206-238)||(225337-225369)
[»] chr2 (1 HSPs)
chr2 (205-237)||(24975384-24975416)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3180622 - 3180859
Alignment:
Q  18 aatctctatcacaacttcacttgatagttatttcattcatctgccatatcttgctcc-----------------tcagaggtatgttttcctgtataatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||    
T  3180622 aatctctatcacaacttcacttgatagttatttcattcatctgccatatcttgctcctcaggggataggtctcctcagaggtatgttttcctgtataatt 3180721  T
Q  101 gtgagcatcatttgtcatgatctctattgcactgacacttctgattgaaggtgtgtcccggaatcataacctatgtcattttcttaaagttttatcattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3180722 gtgagcatcatttgtcatgatctctattgcactgacacttctgattgaacgtgtgtcccggaatcataacctatgtcattttcttaaaattttatcattg 3180821  T
Q  201 tagacgtgtcagtgtcgtgtccggtgtccgtgtctgtg 238  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  3180822 tagacgtgtcagtgtcctgtccggtgtccgtgtttgtg 3180859  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 21479115 - 21479086
Alignment:
Q  205 cgtgtcagtgtcgtgtccggtgtccgtgtc 234  Q
    ||||||||||||||||||||||||||||||    
T  21479115 cgtgtcagtgtcgtgtccggtgtccgtgtc 21479086  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 24205110 - 24205142
Alignment:
Q  206 gtgtcagtgtcgtgtccggtgtccgtgtctgtg 238  Q
    ||||| |||||||||||||||||||||||||||    
T  24205110 gtgtccgtgtcgtgtccggtgtccgtgtctgtg 24205142  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 20946682 - 20946556
Alignment:
Q  75 tcagaggtatgttttcctgtataattgtgagcatcatttgtcatgatctctattgcactgacacttctgattgaaggtgtgtcccggaatcataacctat 174  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||| ||||||||  ||||||||||||  ||||||||| |||    
T  20946682 tcagaggtatgttttcctctataattgtgagcatcatttgttatgatatctattgcaccgacgcttctgatctaaggtgtgtcccaaaatcataacttat 20946583  T
Q  175 gtcattttcttaaagttttatcattgt 201  Q
    |||||||||| ||| ||||||||||||    
T  20946582 gtcattttctcaaaattttatcattgt 20946556  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 20959693 - 20959650
Alignment:
Q  34 tcacttgatagttatttcattcatctgccatatcttgctcctca 77  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||    
T  20959693 tcacttggtagttatttctttcatttgccatatcttgctcctca 20959650  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 31084320 - 31084285
Alignment:
Q  205 cgtgtcagtgtcgtgtccggtgtccgtgtctgtgct 240  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31084320 cgtgtcagtgtcgtgtccggtgtccatgtctgtgct 31084285  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 18137 - 18198
Alignment:
Q  172 tatgtcattttcttaaagttttatcattgtagacgtgtcagtgtcgtgtccggtgtccgtgt 233  Q
    ||||| ||||||| ||| |||||||  ||| ||||||||||||||||||| |||||||||||    
T  18137 tatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgtccgtgt 18198  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 25956563 - 25956525
Alignment:
Q  122 ctctattgcactgacacttctgattgaaggtgtgtcccg 160  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  25956563 ctctattgcacggacacttctgattgaaggcgtgtcccg 25956525  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 1885560 - 1885532
Alignment:
Q  209 tcagtgtcgtgtccggtgtccgtgtctgt 237  Q
    |||||||||||||||||||||||||||||    
T  1885560 tcagtgtcgtgtccggtgtccgtgtctgt 1885532  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 26178610 - 26178564
Alignment:
Q  114 gtcatgatctctattgcactgacacttctgattgaaggtgtgtcccg 160  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||||    
T  26178610 gtcatgatctctgatgcacggacacttctgattgaaggtatgtcccg 26178564  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 4323904 - 4323961
Alignment:
Q  178 attttcttaaagttttatcattgtagacgtgtcagtgtcgtgtccggtgtccgtgtct 235  Q
    ||||||||||| | ||||| ||||  |||||||||| |||||| ||||||||||||||    
T  4323904 attttcttaaattattatcgttgtcaacgtgtcagtatcgtgttcggtgtccgtgtct 4323961  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 785384 - 785420
Alignment:
Q  122 ctctattgcactgacacttctgattgaaggtgtgtcc 158  Q
    |||| |||||| |||||||||||||||||||||||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcc 785420  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 17168924 - 17168860
Alignment:
Q  172 tatgtcattttcttaaagttttatcattgtagacgtgtcagtgtcgtgtccggtgtccgtgtctg 236  Q
    ||||||||||| | ||| | |||||| ||| |||||||  ||||||||| |||||||||||||||    
T  17168924 tatgtcattttttcaaattattatcaatgtcgacgtgtttgtgtcgtgttcggtgtccgtgtctg 17168860  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 34197235 - 34197199
Alignment:
Q  122 ctctattgcactgacacttctgattgaaggtgtgtcc 158  Q
    |||||||||||||||||||||  ||||||||||||||    
T  34197235 ctctattgcactgacacttctagttgaaggtgtgtcc 34197199  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 39619047 - 39619081
Alignment:
Q  127 ttgcactgacacttctgattgaaggtgtgtcccgg 161  Q
    |||||| ||||||||||||||||||||||||||||    
T  39619047 ttgcacggacacttctgattgaaggtgtgtcccgg 39619081  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 22881678 - 22881708
Alignment:
Q  205 cgtgtcagtgtcgtgtccggtgtccgtgtct 235  Q
    |||||||||||||||||||||||||||||||    
T  22881678 cgtgtcagtgtcgtgtccggtgtccgtgtct 22881708  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 8783 - 8815
Alignment:
Q  206 gtgtcagtgtcgtgtccggtgtccgtgtctgtg 238  Q
    |||||||||||||||||||||||||||| ||||    
T  8783 gtgtcagtgtcgtgtccggtgtccgtgtatgtg 8815  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 10247 - 10283
Alignment:
Q  122 ctctattgcactgacacttctgattgaaggtgtgtcc 158  Q
    |||| |||||| |||||||||||||||||||||||||    
T  10247 ctctcttgcacagacacttctgattgaaggtgtgtcc 10283  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 225337 - 225369
Alignment:
Q  206 gtgtcagtgtcgtgtccggtgtccgtgtctgtg 238  Q
    ||||| |||||||||||||||||||||||||||    
T  225337 gtgtccgtgtcgtgtccggtgtccgtgtctgtg 225369  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 24975384 - 24975416
Alignment:
Q  205 cgtgtcagtgtcgtgtccggtgtccgtgtctgt 237  Q
    |||||||||||||||||||||||||||| ||||    
T  24975384 cgtgtcagtgtcgtgtccggtgtccgtgcctgt 24975416  T

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