View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_76 (Length: 240)

Name: NF3074_low_76
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_76
NF3074_low_76
[»] chr5 (11 HSPs)
chr5 (12-223)||(39487098-39487309)
chr5 (13-191)||(39463887-39464065)
chr5 (32-221)||(39457644-39457833)
chr5 (13-223)||(39476139-39476355)
chr5 (13-191)||(39470090-39470267)
chr5 (16-170)||(39460936-39461090)
chr5 (13-130)||(39451726-39451843)
chr5 (13-162)||(39472724-39472873)
chr5 (13-191)||(39483922-39484106)
chr5 (13-130)||(39455353-39455470)
chr5 (14-117)||(43311861-43311964)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 39487309 - 39487098
Alignment:
Q  12 aattctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39487309 aattctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatc 39487210  T
Q  112 aagccacttgatgatatcatcagagtcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatataccggtaattctgctagatca 211  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39487209 aagccacttgatgatatcatcagactcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatataccggtaattctgctagatca 39487110  T
Q  212 ggatgagagaaa 223  Q
    ||||||||||||    
T  39487109 ggatgagagaaa 39487098  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 39463887 - 39464065
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  39463887 attctcaatagcaagtgcaatctccttaacctgatcttcatcgaaagaacctctgctcccgaagcagaggaaaactactgaggaaggaggttgatcatca 39463986  T
Q  113 agccacttgatgatatcatcagagtcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatata 191  Q
    ||||||||||||||||||||| | |||  || | |||| ||||||||||| |||||||||| ||||||||| |||||||    
T  39463987 agccacttgatgatatcatcataatcaatggggtccttggttttgggctctgggtttaatatgggtcccacaggatata 39464065  T

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Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 39457644 - 39457833
Alignment:
Q  32 atctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatcaagccacttgatgatatcat 131  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| |    
T  39457644 atctccttaacctgatcctcatcgaaaaaccccctgctcccgaagcagaggaaaacttccgaggaaggaggttgatcatcaagccacttgacaatatcgt 39457743  T
Q  132 cagagtcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatataccggtaattctgctagatcaggatgagaga 221  Q
    |||| |||  || || ||| |||||||||| |||||||||||  ||||| || |||||||  |||||  |||||||||||||||||||||    
T  39457744 cagaatcaatggcgctcttggttttgggcttggggtttaatattggtcctaccggatatatgggtaaacctgctagatcaggatgagaga 39457833  T

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Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 39476355 - 39476139
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    |||||||| ||||||||| ||||| ||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  39476355 attctcaacagcatgtgcgatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatca 39476256  T
Q  113 agccacttgatgatatcatcaga------gtcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatataccggtaattctgcta 206  Q
    |||||||| || | |||||||||      |||| | |||||||| |||||||||||  |||||||||| |||||||| ||||||| | |||  || | ||    
T  39476255 agccacttcattacatcatcagaatcagcgtcaacagtgccctttgttttgggctcaaggtttaataaaggtcccaccggatatatcagtatatccgata 39476156  T
Q  207 gatcaggatgagagaaa 223  Q
    |||||||||||||||||    
T  39476155 gatcaggatgagagaaa 39476139  T

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Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 39470090 - 39470267
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    |||||| | |||| |||| ||| | ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  39470090 attctctacagcaagtgcgatccccttaacctgatcctcatcgaaaaaaccc-tgctcccgaagcagaggaaaactaccgaggaaggaggctgatcatca 39470188  T
Q  113 agccacttgatgatatcatcagagtcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatata 191  Q
    ||||||||||  ||||| ||||| ||| |||||||||| |||||||||||  ||||||||| |||||| | ||||||||    
T  39470189 agccacttgacaatatcgtcagaatcaacggtgcccttggttttgggctctaggtttaatatgggtcctattggatata 39470267  T

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Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 39461090 - 39460936
Alignment:
Q  16 ctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatcaagc 115  Q
    |||||| |||||||| ||||| |||| ||||||||||||||| |  |||||  |||| ||||||||||||||||| |||||| |||||||||||||||||    
T  39461090 ctcaatggcatgtgcgatctccttaatctgatcctcatcgaaggtacccctagtcccaaagcagaggaaaactacggaggaaagaggttgatcatcaagc 39460991  T
Q  116 cacttgatgatatcatcagagtcatcggtgcccttagttttgggctcggggttta 170  Q
    ||||||||||||||||| ||  || | || ||||| ||||||||||| |||||||    
T  39460990 cacttgatgatatcatctgaaccaactgttcccttggttttgggctcagggttta 39460936  T

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Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 39451843 - 39451726
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||| | ||||||||||| |||||||||||||| || || ||| ||||||||||||||    
T  39451843 attctcaatagcatgtgcgatctccttaacctggtcctcatcgaaacaacccctgctcccaaagcagaggaaaacaacagaagaaagaggttgatcatca 39451744  T
Q  113 agccacttgatgatatca 130  Q
    ||||| ||||||||||||    
T  39451743 agccagttgatgatatca 39451726  T

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Target: chr5; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 39472873 - 39472724
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    ||||||||||||   ||||||||   ||||||||||||| |||||||| ||| | || |||||||||||||||||||| ||||| | |||||||||||||    
T  39472873 attctcaatagcgcatgcaatctgcgtaacctgatcctcgtcgaaagaacccatacttccgaagcagaggaaaactactgaggatgcaggttgatcatca 39472774  T
Q  113 agccacttgatgatatcatcagagtcatcggtgcccttagttttgggctc 162  Q
    |||||||||||||| ||||| || ||| |||||||||| |||||||||||    
T  39472773 agccacttgatgatgtcatcggaatcaacggtgcccttggttttgggctc 39472724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 39484106 - 39483922
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    |||||||| | ||||||| ||||| ||||||||||| ||||| ||| | ||||| ||||| ||||||||||||||||| |||||||||||||||| || |    
T  39484106 attctcaacaacatgtgcgatctccttaacctgatcttcatcaaaataacccctactcccaaagcagaggaaaactacggaggaaggaggttgattatga 39484007  T
Q  113 agccacttgatgatatcatcaga------gtcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatata 191  Q
    |||||||| || |||||||||||      |||| | |||||||| ||||| ||||| ||||||||||| |||||||| |||||||    
T  39484006 agccacttcattatatcatcagaatcagcgtcaacagtgccctttgttttaggctcagggtttaataaaggtcccaccggatata 39483922  T

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Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 39455470 - 39455353
Alignment:
Q  13 attctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatca 112  Q
    |||||||||||||  ||| ||||| ||||||||||||||||| ||| | ||  |||| |||||||| |||||||| || |||||| ||||||||||||||    
T  39455470 attctcaatagcacatgcgatctccttaacctgatcctcatcaaaacaacctttgcttccgaagcaaaggaaaacgacggaggaaagaggttgatcatca 39455371  T
Q  113 agccacttgatgatatca 130  Q
    ||||||||||||||||||    
T  39455370 agccacttgatgatatca 39455353  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 43311861 - 43311964
Alignment:
Q  14 ttctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatcaa 113  Q
    |||||||||||||  ||||||||  |||  ||||||||||||||||| ||| ||||||| ||||| ||  ||||||| || ||| ||||||| ||||| |    
T  43311861 ttctcaatagcatacgcaatctccctaatttgatcctcatcgaaagaacccttgctcccaaagcaaagataaactacggacgaaagaggttggtcatcga 43311960  T
Q  114 gcca 117  Q
    ||||    
T  43311961 gcca 43311964  T

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