View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_78 (Length: 236)
Name: NF3074_low_78
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 44884271 - 44884481
Alignment:
| Q |
11 |
tgagatgaagaggaacaatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactcatctatcatattctggaggtcttcatcagtg |
110 |
Q |
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| T |
44884271 |
tgagaagaagaggaacaatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactcatctatcatattctggaggtcttcatcagtg |
44884370 |
T |
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| Q |
111 |
gaaacagtgatgaggttgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttcttccatgaaggagagtgcgagagaggtgagaaaaga |
210 |
Q |
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| T |
44884371 |
gaaacagtgatgaggttgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttcttccatgaaggagagtgcgagagaggtgagaaaaga |
44884470 |
T |
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| Q |
211 |
ggtgtgataag |
221 |
Q |
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| T |
44884471 |
ggtgtgataag |
44884481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 9019445 - 9019385
Alignment:
| Q |
11 |
tgagatgaagaggaacaatctgagtcgagaaggtgaaggagaagggtttgaagacaaacga |
71 |
Q |
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| T |
9019445 |
tgagatgaacatgaacaatctgagtcgagaaggggaaggagacgggtttgaagacaaacga |
9019385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 30769922 - 30769868
Alignment:
| Q |
120 |
atgaggttgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttc |
174 |
Q |
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| T |
30769922 |
atgaggttatcaaggtcttcatttggaagctggtacttgagagtaaagggtcttc |
30769868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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