View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_79 (Length: 235)
Name: NF3074_low_79
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_79 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31705 - 31925
Alignment:
| Q |
1 |
aattcttaatcataatttcctaagcaagacctcaagaagataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagc |
100 |
Q |
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| T |
31705 |
aattcttaatcataatttcctaagcaagacctcaagaagataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagc |
31804 |
T |
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| Q |
101 |
caaaacaacgaagaatagcagtaaacctttctaaagcaaatcagaaacaatattcattaatcactaaaatagaaagaaacggtatcataataaagtcagg |
200 |
Q |
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| T |
31805 |
caaaacaacgaagaatagcagtaaacctttctaaagcaaatcagaaacaatattcattaatcactaaaatagaaagaaacggtatcataataaagtcagg |
31904 |
T |
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| Q |
201 |
actgacatcagcataaaatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31905 |
actgacatcagcataaaatat |
31925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 103775 - 103676
Alignment:
| Q |
1 |
aattcttaatcataatttcctaagcaagacctcaagaagataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||||||| ||||||||| |
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| T |
103775 |
aattcttaatcataatttcctaagcaagacctcaagaggataaatttcaaatatgacattatggcaatacgatccgaagataattaacagattagaaagc |
103676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 10426363 - 10426548
Alignment:
| Q |
39 |
gataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaacgaagaatagcagtaaacctttctaaagca |
138 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
10426363 |
gatatatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagccaaaacaatgaagaatagcagtaaacctttcaaaagca |
10426462 |
T |
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| Q |
139 |
aatcagaaacaatattcattaatcactaaaatagaaagaaacggtatc---ataataaagtcaggactgacatcagcataaaatat |
221 |
Q |
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| T |
10426463 |
aatcagaaacaatattcattaatcactaaaatagaaagaaacagtatcataataataaagtcaggactgacatcagcataaaatat |
10426548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7892310 - 7892120
Alignment:
| Q |
1 |
aattcttaatcataatttcctaagcaagacc-tcaagaagataaatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaag |
99 |
Q |
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||||||| || ||||||| ||||||| | || |||||| |||||||||||||||||||||||||||| | |||| ||| |||||||||| ||||||||| |
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| T |
7892310 |
aattctttattataatttgctaagcagggccctcaagaggataaatttcaaatatgacattatagcattacgatatgaagacgattaacagtttagaaag |
7892211 |
T |
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| Q |
100 |
ccaaaacaacgaagaatagcagtaaacctttctaaagcaaatcagaaacaatattcattaatcactaaaatagaaagaaacggtatcataa |
190 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||| |
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| T |
7892210 |
ccaaaataacgaacaatagcagtaaacctttctaaagcaaataagaaacaatatttattaatcactaaaatagaaagatacaatatcataa |
7892120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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