View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_low_8 (Length: 616)

Name: NF3074_low_8
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_low_8
NF3074_low_8
[»] chr1 (6 HSPs)
chr1 (178-567)||(14185525-14185915)
chr1 (246-567)||(7606992-7607320)
chr1 (104-324)||(51385436-51385657)
chr1 (392-571)||(51385224-51385403)
chr1 (246-372)||(31769754-31769880)
chr1 (104-168)||(27841257-27841322)
[»] chr4 (2 HSPs)
chr4 (246-564)||(41811133-41811454)
chr4 (461-568)||(30180918-30181025)
[»] chr8 (3 HSPs)
chr8 (459-568)||(16360595-16360704)
chr8 (519-571)||(36242793-36242845)
chr8 (104-168)||(16360456-16360521)
[»] chr6 (2 HSPs)
chr6 (251-529)||(2313376-2313651)
chr6 (177-372)||(32445304-32445497)
[»] chr5 (1 HSPs)
chr5 (251-372)||(9262653-9262775)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 6e-82; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 178 - 567
Target Start/End: Original strand, 14185525 - 14185915
Alignment:
Q  178 ttaaactactcatacatgtggtgattatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacaggt 277  Q
    |||||||||  |||||||| ||||||| |||||||||||| |   ||| ||||||| ||  | |||||||||||||||||||||||||||||| | | ||    
T  14185525 ttaaactacctatacatgttgtgattagttttaaagaatgatatagtagacattaagttataatagtttaatctttgtttgtttatcatcttctaaaagt 14185624  T
Q  278 ttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattataacgttcctggtatgagttaaaagcat 377  Q
    |||| |||||||||  |||||||||||  ||||||||||||| || |||| || ||||||||||||| || |||| ||||||||||||||||||| | ||    
T  14185625 ttcatatatggaactaatacaaagtgacgagggtagaaccttaaacgaaggatgactgctatggaaatatgataatgttcctggtatgagttaaa-gtat 14185723  T
Q  378 gtttacg---attaagtatgagataaaagaggctatgactactaccattgaaatacatattttaacaataaactaagacttcatttcatatgtcatattt 474  Q
    ||||      |||||| |||||||||||||||||||||||||| | ||||||||   |||||||| || |||||||||||||||| ||||| ||||||||    
T  14185724 gttttttttaattaagaatgagataaaagaggctatgactactcctattgaaatgggtattttaataagaaactaagacttcattccatatatcatattt 14185823  T
Q  475 cactttaagaaaaaatgaagttagtgggacataaatatgatttgtgaaaattcttatgaagactttctgtgcatgattattgtttttgatgtg 567  Q
    ||||| ||| || |||||||| ||||| | ||||||| ||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  14185824 cacttaaaggaagaatgaagtcagtggaaaataaataggattt-tgaaacttcttatgaagactttttgtgcctgattattgtttttgatgtg 14185915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 246 - 567
Target Start/End: Complemental strand, 7607320 - 7606992
Alignment:
Q  246 taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaac 345  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||  ||||||||||| ||||||||||||||||| |||| || |||||||||||||     
T  7607320 taatctttgtttgtttatcatcttctatatgtttcatatatggaactaatacaaagtgacaagggtagaaccttgaacgaaggatgactgctatggaaat 7607221  T
Q  346 attataacgttcctggtatgagttaaaagcatgtttacg---------attaagtatgagataaaagaggctatgactactaccattgaaatacatattt 436  Q
    || |||| ||||||||||||||||||| | ||||||            |||||| |||||||||||||||||||||||||| | ||||||||   |||||    
T  7607220 atgataatgttcctggtatgagttaaa-gtatgtttttttttttttttattaagaatgagataaaagaggctatgactactcctattgaaatgggtattt 7607122  T
Q  437 taacaataaactaagacttcatttcatatgtcatatttcactttaagaaaaaatgaagttagtgggacataaatatgatttgtgaaaattcttatgaaga 536  Q
    ||| || |||||||||||||||| ||||| ||||||||||||| ||| || |||||||| | ||| | ||||||| ||||| ||||| ||||||||||||    
T  7607121 taataagaaactaagacttcattccatatatcatatttcacttaaaggaagaatgaagtcactggaaaataaataggattt-tgaaacttcttatgaaga 7607023  T
Q  537 ctttctgtgcatgattattgtttttgatgtg 567  Q
    |||| ||||| ||||||||||||||||||||    
T  7607022 ctttttgtgcctgattattgtttttgatgtg 7606992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 104 - 324
Target Start/End: Complemental strand, 51385657 - 51385436
Alignment:
Q  104 aattcatctggccaaattggattgg-gatatgtcacagctcatagtaatgtgttctttgatccttaannnnnnnattaaactactcatacatgtggtgat 202  Q
    ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||       ||| || |||  |||||||| |||||    
T  51385657 aattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatccttaatttttttattgaagtacctatacatgttgtgat 51385558  T
Q  203 tatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagt 302  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || ||| |||||    
T  51385557 tatttttaaagaatgctattgtaaacattaatttgcattagtttattgtttgtctgtttatcatcttcaacaggtttcaaatatggagccaataaaaagt 51385458  T
Q  303 gataagggtagaaccttgaaag 324  Q
    || |||||||||||||||||||    
T  51385457 gacaagggtagaaccttgaaag 51385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 392 - 571
Target Start/End: Complemental strand, 51385403 - 51385224
Alignment:
Q  392 atgagataaaagaggctatgactactaccattgaaatacatattttaacaataaactaagacttcatttcatatgtcatatttcactttaagaaaaaatg 491  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||| || |||||||||||||||||| |||||||||| ||| ||| || | ||    
T  51385403 atgagataaaagaggctatgactactactattgagttacatattttaacaagaagctaagacttcatttcataagtcatatttctcttaaaggaagattg 51385304  T
Q  492 aagttagtgggacataaatatgatttgtgaaaattcttatgaagactttctgtgcatgattattgtttttgatgtgccac 571  Q
    |||||||||||| ||||||||||||||||||| |||||||||  ||||||||| ||||||||||||| ||||| ||||||    
T  51385303 aagttagtgggaaataaatatgatttgtgaaacttcttatgacaactttctgtacatgattattgttcttgatttgccac 51385224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 246 - 372
Target Start/End: Complemental strand, 31769880 - 31769754
Alignment:
Q  246 taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaac 345  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||  ||||||||||| ||||||||||||||||| |||| || |||||||||||||     
T  31769880 taatctttgtttgtttatcatcttctataagtttcatatatggaactaatacaaagtgacaagggtagaaccttgaacgaaggatgactgctatggaaat 31769781  T
Q  346 attataacgttcctggtatgagttaaa 372  Q
    || |||| |||||||||||||||||||    
T  31769780 atgataatgttcctggtatgagttaaa 31769754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 27841322 - 27841257
Alignment:
Q  104 aattcatctggccaaattggattgggat-atgtcacagctcatagtaatgtgttctttgatcctta 168  Q
    |||||||||| ||||||||||||    | |||||||||||||||||| ||||||||||||||||||    
T  27841322 aattcatctgaccaaattggatttatgtcatgtcacagctcatagtagtgtgttctttgatcctta 27841257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 246 - 564
Target Start/End: Original strand, 41811133 - 41811454
Alignment:
Q  246 taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaac 345  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||  ||||||||||| ||||||||||||||||| |||| || |||||||||||||     
T  41811133 taatctttgtttgtttatcatcttctataagtttcatatatggaactaatacaaagtgacaagggtagaaccttgaacgaaggatgactgctatggaaat 41811232  T
Q  346 attataacgttcctggtatgagttaaaagcatgtttacgatt------aagtatgagataaaagaggctatgactactaccattgaaatacatattttaa 439  Q
    || |||| ||||||||||||||||||| | ||||||    ||      ||| |||||||||||||||||||||||||| | ||||||||   ||||||||    
T  41811233 atgataatgttcctggtatgagttaaa-gtatgtttttttttttttttaagaatgagataaaagaggctatgactactcctattgaaatgggtattttaa 41811331  T
Q  440 caataaactaagacttcatttcatatgtcatatttcactttaagaaaaaatgaagttagtgggacataaatatgatttgtgaaaattcttatgaagactt 539  Q
     || |||||||||||||||| ||||| ||||||||||||| ||| || |||||||| ||||| | ||||||| ||||| ||||| |||||||||||||||    
T  41811332 taagaaactaagacttcattccatatatcatatttcacttaaaggaagaatgaagtcagtggaaaataaataggattt-tgaaacttcttatgaagactt 41811430  T
Q  540 tctgtgcatgattattgtttttgat 564  Q
    | ||||| |||||||||||||||||    
T  41811431 t-tgtgcctgattattgtttttgat 41811454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 461 - 568
Target Start/End: Original strand, 30180918 - 30181025
Alignment:
Q  461 catatgtcatatttcactttaagaaaaaatgaagttagtgggacataaatatgatttgtgaaaattcttatgaagactttctgtgcatgattattgtttt 560  Q
    ||||| ||| ||||||||| ||  || |||||||| || |||| ||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||    
T  30180918 catatatcacatttcacttgaatgaagaatgaagtcagcgggaaataaatagggtttgtgaaacttcttatgaagactttttgtgcatgattattgtttt 30181017  T
Q  561 tgatgtgc 568  Q
    ||||||||    
T  30181018 tgatgtgc 30181025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 459 - 568
Target Start/End: Original strand, 16360595 - 16360704
Alignment:
Q  459 ttcatatgtcatatttcactttaagaaaaaatgaagttagtgggacataaatatgatttgtgaaaattcttatgaagactttctgtgcatgattattgtt 558  Q
    ||||||| ||| ||||||||| ||  || |||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  16360595 ttcatatatcacatttcacttaaatgaagaatgaagtcagtgggaaataaataggatttgtgaaacttcttatgaagactttctgtgcatgattattgtt 16360694  T
Q  559 tttgatgtgc 568  Q
    ||||||||||    
T  16360695 tttgatgtgc 16360704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 571
Target Start/End: Complemental strand, 36242845 - 36242793
Alignment:
Q  519 tgaaaattcttatgaagactttctgtgcatgattattgtttttgatgtgccac 571  Q
    ||||| |||||||||||||||| |||||||||||| |||| ||||||||||||    
T  36242845 tgaaacttcttatgaagactttatgtgcatgattactgttcttgatgtgccac 36242793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 16360456 - 16360521
Alignment:
Q  104 aattcatctggccaaattggattgg-gatatgtcacagctcatagtaatgtgttctttgatcctta 168  Q
    |||||||||| ||||||||||||   || |||||||| ||||||||| ||||||||||||||||||    
T  16360456 aattcatctgaccaaattggatttatgacatgtcacaactcatagtagtgtgttctttgatcctta 16360521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 251 - 529
Target Start/End: Complemental strand, 2313651 - 2313376
Alignment:
Q  251 tttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattat 350  Q
    ||||| ||||| | |||||| ||||||||||||  ||||| | |||||||||||| | |||| |||||||||||||||||||||| ||||||||  | ||    
T  2313651 tttgtgtgtttgtgatcttctacaggtttcaaaactggaagcaatacaaagtgatgatggtacaaccttgaaagaagaattactggtatggaaatttgat 2313552  T
Q  351 aac-gttcctggtatgagttaaa--agc-atgtttacgattaagtatgagataaaagaggctatgactactaccattgaaatacatattttaacaataaa 446  Q
    |||  ||||||||||||||||||   || | ||||| ||||||| ||||||||||  |   |||||||| ||  |||| |||  || ||||| ||| |||    
T  2313551 aacacttcctggtatgagttaaagtggctaggtttaggattaagaatgagataaaccaatttatgactattattattggaatgtatgttttatcaagaaa 2313452  T
Q  447 ctaagacttcatttcatatgtcatatttcactttaagaaaaaatgaagttagtgggacataaatatgatttgtgaaaattctt 529  Q
    ||||||||  |||       |||||| |||||| ||| || |||||||| ||||| | ||||||||||||||||||| |||||    
T  2313451 ctaagactgaatt-------tcatatatcacttaaaggaagaatgaagtaagtggaaaataaatatgatttgtgaaacttctt 2313376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 177 - 372
Target Start/End: Original strand, 32445304 - 32445497
Alignment:
Q  177 attaaactactcatacatgtggtgattatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacagg 276  Q
    ||||||||||  |||||||| |||||||  |||||||||||    |||||| ||||| |||||| |||| ||| ||||| ||||| |||||||  |||||    
T  32445304 attaaactacctatacatgttgtgattagctttaaagaatgtaattgtaaa-attaagttgcataagtt-aat-tttgtgtgtttgtcatcttatacagg 32445400  T
Q  277 tttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattataac-gttcctggtatgagttaaa 372  Q
    |||||||  | ||| | |||||||||||| | |||| |||||||||||||||||||||| |||| |||  | |||||  ||||||||||||||||||    
T  32445401 tttcaaaactagaagcaatacaaagtgatgatggtacaaccttgaaagaagaattactggtatgtaaatttgataacacttcctggtatgagttaaa 32445497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 9262775 - 9262653
Alignment:
Q  251 tttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattat 350  Q
    ||||| ||||| | |||||| ||||||||||||  ||||| | |||||||||||| | |||| |||||||||||||||||||||| ||||||||  | ||    
T  9262775 tttgtgtgtttgtgatcttctacaggtttcaaaactggaagcaatacaaagtgatgatggtacaaccttgaaagaagaattactggtatggaaatttgat 9262676  T
Q  351 aac-gttcctggtatgagttaaa 372  Q
    |||  ||||||||||||||||||    
T  9262675 aacacttcctggtatgagttaaa 9262653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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