View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_82 (Length: 227)
Name: NF3074_low_82
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_82 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 159809 - 160029
Alignment:
| Q |
7 |
gaagatgctcgtaaaattaattgcgtttagtgggaaaaggtgtcatcgacttaggttcctaagataaatgagttcgttcgactcaactagtgtacacccc |
106 |
Q |
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| T |
159809 |
gaagatgctcctaaaattcattgcgttaagtgggaaaaggtgtcatcgacttaggttcctaagataaatgagttcggtcgactcaactagtgtacacccc |
159908 |
T |
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| Q |
107 |
taactaaaatgtaatcaattggtacatacactacacaaataaccatctatattgatatgatacaagtataaaagtgttctggttgctcaaaatgatcctc |
206 |
Q |
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| T |
159909 |
taactaaaatgtaatcaattggtacatacactacacaaataaccatctatattgatatgatacaagtataaaagtgttctggttgctcaaaatgatcctc |
160008 |
T |
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| Q |
207 |
acatgtcacagggaaaaataa |
227 |
Q |
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| T |
160009 |
acatgtcacagggaaaaataa |
160029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 151373 - 151594
Alignment:
| Q |
7 |
gaagatgctcgtaaaattaattgcgtttagtgggaaaaggtgtcatcgacttaggttcctaagataaatgagttcgttcgactcaactagtgtacacccc |
106 |
Q |
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| T |
151373 |
gaagatactcgtaaaattcattgcgttaagtga-aaaaggagtcatcgacttgggttcctaagataaatgagttcggacgactcgactagtgtacacccc |
151471 |
T |
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| Q |
107 |
taactaaaatgtaatcaattggtacatacactacacaaataaccatc--tatattgatatgatacaagtataaaagtgttctggttgctcaaaatgatcc |
204 |
Q |
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| T |
151472 |
taactaaaacgtaatcaatcggtacatatacactacaaataaccatctatatattgatatgatacaagtattaaagttttctggttgctcaaaatgatcc |
151571 |
T |
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| Q |
205 |
tcacatgtcacagggaaaaataa |
227 |
Q |
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| T |
151572 |
tcacatgtcacagggaaaaataa |
151594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 159751 - 159798
Alignment:
| Q |
62 |
ttcctaagataaatgagttcgttcgactcaactagtgtacacccctaa |
109 |
Q |
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| T |
159751 |
ttcccaagataaatgagttcggtcgactcaacatgtgtacacccctaa |
159798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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