View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_9 (Length: 600)
Name: NF3074_low_9
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 42 - 592
Target Start/End: Original strand, 10561230 - 10561780
Alignment:
| Q |
42 |
gttaagagagaatggctagtgctagtcttgttccattaatattactgattctggtgcaattagcttatgcatggatgaatattacctcaaaactttctat |
141 |
Q |
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| T |
10561230 |
gttaagagagaatggctagtgctagtcttgttccattaatattactgattctggtgcaattagcttatgcatggatgaatattacctcaaaactttctat |
10561329 |
T |
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| Q |
142 |
tctaggtggcatgaaccctcttattcttgttgcataccgtcaaatctttggagctgtttccattgctccctttgcttattggattgaacgtgataaagtt |
241 |
Q |
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| T |
10561330 |
tttaggtggcatgaaccctcttatccttgttgcataccgtcaaatctttggagctgtttccattgctccctttgcttattggattgaacgtgataaagtt |
10561429 |
T |
|
| Q |
242 |
ccaaggatgacgaaacgcattatgattcagatattgttatcttccttaacaggagtaacaggaagtcagattctatatttcatagggctaaaatattcaa |
341 |
Q |
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| T |
10561430 |
ccaaggatgacaaaacgcattatggttcagatactgttatcttccttaacaggagtaacaggaagtcagattctgtatttcatagggctaaaatattcaa |
10561529 |
T |
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| Q |
342 |
cccctataattgcatgtgcactcaccaatttggacacagcttttacatttgttcttgcaattctcttcagacaagagaatttgggaataaagaagaagag |
441 |
Q |
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| T |
10561530 |
ccccgataatcgcatgtgcgctcaccaatttggacacagcttttacctttgttcttgcaattctcttcagacaagagaatttgggaataaagaagaagag |
10561629 |
T |
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| Q |
442 |
tggtgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggtt |
541 |
Q |
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| T |
10561630 |
tggcgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggtt |
10561729 |
T |
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| Q |
542 |
cattggaattatgcagagaaacttgaacatggtcatcttaacttctctgct |
592 |
Q |
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| T |
10561730 |
cattggagttatgcagagaaacttgaacatggtcatcttaacttctctgct |
10561780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 410 - 560
Target Start/End: Original strand, 45936245 - 45936395
Alignment:
| Q |
410 |
agacaagagaatttgggaataaagaagaagagtggtgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacg |
509 |
Q |
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| T |
45936245 |
agacaagagaatttgggaataaagaagaaaagtggtatagcaaaagtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatg |
45936344 |
T |
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| Q |
510 |
caaaagtaattgatgtacctgaatcaagggttcattggaattatgcagaga |
560 |
Q |
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| T |
45936345 |
gacaagtaattggtataccagaatcaaaaattcattggagttatgctgaga |
45936395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 45935808 - 45935860
Alignment:
| Q |
239 |
gttccaaggatgacgaaacgcattatgattcagatattgttatcttccttaac |
291 |
Q |
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| T |
45935808 |
gttccaaggatgacaaagcgcattatggttcagatattgttatcttccataac |
45935860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 411
Target Start/End: Original strand, 45936059 - 45936144
Alignment:
| Q |
326 |
gggctaaaatattcaacccctataattgcatgtgcactcaccaatttggacacagcttttacatttgttcttgcaattctcttcag |
411 |
Q |
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| T |
45936059 |
gggctaaaatacacaaccgcaacaattgcatgtgccctaaccaatttgcttccagcttttacatttgtcctagcaatcctcttcag |
45936144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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