View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_high_1 (Length: 818)
Name: NF3078_high_1
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_high_1 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 406 - 780
Target Start/End: Original strand, 27754601 - 27754975
Alignment:
| Q |
406 |
gttcatcgaagtctaacaaactcaatgacattttaatgccctaaacataaaaacttgtataaatcagtcagaagattgaatcaccaacatacatggatga |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27754601 |
gttcatcgaagtctaacaaactcaatgacattttaatgccctaaacataaaaacttatataaatcagtcagaagattgaatcaccaacatacatggatga |
27754700 |
T |
|
| Q |
506 |
aatcatatatattggcagtatcagaggcaatatccaataagggtcctcttgacacaactgtgtattttctatcccctgctacaaatttacctttgaacaa |
605 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27754701 |
aatcatatatattggcagtgtcagaggcaatatccaataagggtcctcttgacacaactgtgtattttctatcccctgctacaaatttacctttgaacaa |
27754800 |
T |
|
| Q |
606 |
aacacagatgaagttgtatgtgtaattgcaagacagagtgtctactttgtcagcaagtataagtttgtcaacaatataagttgtacagttgcataagctt |
705 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27754801 |
aacacaaatgaagttgtatgtgtaattgcaagacagagtgtctactttgtcagcaagtataagtttgtcaacaatataagttgtacagttgcataagctt |
27754900 |
T |
|
| Q |
706 |
ttgtgttattgatgccctaaacattgagatctaaacaatacattgaaatttaaaaatacacactaggagaagtat |
780 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
27754901 |
ttgtgttattaatgccctaaacattgagatctaagcaatacattgaaatttaaaaatacacactaagagaagtat |
27754975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 165 - 355
Target Start/End: Original strand, 27754413 - 27754603
Alignment:
| Q |
165 |
attttgatacgtctgattcatagaactaaatggtaacaaaggaatactggaagtgtgggcctcattacaagtaaaattttagcctgtaagatttactaca |
264 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27754413 |
attttgatacgtctcattcatagaactaaatggtaacaaaggaatactggaagtgtgggcctcattacaagtaaaattttagcctataagatttactaca |
27754512 |
T |
|
| Q |
265 |
acacacgataagcaaactctactttaaatacagggaaatgctaacgagtgcccctagggcactctttaagggccatgagtgctaagtagtt |
355 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27754513 |
acacacgataagcaaactctactttaaatatatggaaatgctaacgagtgcccctagggcactctttaagggccatgagtgctaagtagtt |
27754603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 27754310 - 27754413
Alignment:
| Q |
39 |
caatcccaataacgtgatttcagaaatggtggttagtagcagcatgtaaattttcagctggtgtttctaactagatgcaaaaggagtaagataataacta |
138 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27754310 |
caatcccaataacgtgatttcagaaatggtggctagtagcagcatgtaaattttcagctggtgtttctaactagatgcaaaaagagtaagataataacta |
27754409 |
T |
|
| Q |
139 |
caaa |
142 |
Q |
| |
|
|||| |
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|
| T |
27754410 |
caaa |
27754413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27754221 - 27754262
Alignment:
| Q |
1 |
attttgacaaaactcaagcttcatgtcgatcataaaagcaat |
42 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
27754221 |
attttgacaaaactcaagcttcatgtcgatcataaaagcaat |
27754262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 39 - 267
Target Start/End: Original strand, 29364268 - 29364487
Alignment:
| Q |
39 |
caatcccaataacgtgatttcagaaatggtggttagtagcagcatgtaaattttcagctggtgtttctaactagatgcaaaaggagtaagataataacta |
138 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||| || ||||||||||||||||||||||||||||| ||| |||||| |||| |||||| |||| |
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| T |
29364268 |
caatcccaataacgtgatttcagaaacagtggcttgtaacaacatgtaaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcacta |
29364367 |
T |
|
| Q |
139 |
caaaataaataatcagttatcattctattttgatacgtctgattcatagaactaaatggtaacaaaggaatactggaagtgtgggcctcattacaagtaa |
238 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||| | ||| |||||||||||||||||| ||||||| | |
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|
| T |
29364368 |
cagcataaataatcagttatcattctattttgatacttctgattcagagaagtaaat--------cgaaatcctggaagtgtgggcctcagtacaagt-a |
29364458 |
T |
|
| Q |
239 |
aattttagcctgtaagatttactacaaca |
267 |
Q |
| |
|
||||||||||| || ||||||||||||| |
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| T |
29364459 |
aattttagcctacaaaatttactacaaca |
29364487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 29353931 - 29354123
Alignment:
| Q |
39 |
caatcccaataacgtgatttcagaaatggtggttagtagcagcatgtaaattttcagctggtgtttctaactagatg---caaaaggagtaagataataa |
135 |
Q |
| |
|
||||| |||||| |||||||||||| |||| ||||| ||||||||| ||||||||||||| |||||||| ||| | ||||| |||||||||| ||| |
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|
| T |
29353931 |
caatcacaataatatgatttcagaaacagtggctagtaacagcatgtatattttcagctggtatttctaaccagaagaagcaaaaagagtaagatactaa |
29354030 |
T |
|
| Q |
136 |
ctacaaaataaataatcagttatcattctattttgatacgtctgattcatagaactaaatggtaacaaaggaatactggaagtgtgggcctca |
228 |
Q |
| |
|
|| ||| ||||||||| |||| ||||||||||||||||| ||| |||| || || ||||||||| |||| ||||||||||||||| |||||| |
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| T |
29354031 |
ctgcaacataaataattagttgtcattctattttgatacttctaattcgtaaaagtaaatggtacaaaagtaatactggaagtgtgtgcctca |
29354123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 29879859 - 29879685
Alignment:
| Q |
57 |
ttcagaaatggtggttagtagcagcatgtaaattttcagctggtgtttctaactagat---gcaaaaggagtaagataataactacaaaataaataatca |
153 |
Q |
| |
|
||||||||| ||| ||||| || |||||| |||||||||| ||||||||||| ||| | |||| | |||||| ||||||||||| ||||||||||| |
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|
| T |
29879859 |
ttcagaaatagtgactagtaacatcatgtatattttcagctagtgtttctaaccagaacaaggaaaatgggtaagacaataactacaacataaataatca |
29879760 |
T |
|
| Q |
154 |
gttatcattctattttgatacgtctgattcatagaactaaatggtaacaaaggaatactggaagtgtgggcctca |
228 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||| || ||||||||| ||||||||| ||| ||||||||| |||| |
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|
| T |
29879759 |
tttttcattctactttgatacttctgattcataaaagtaaatggtaccaaaggaatcctgaaagtgtgggactca |
29879685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 29879084 - 29879011
Alignment:
| Q |
536 |
tatccaataagggtcctcttgacacaactgtgtattttctatcccctgctacaaatttacctttgaacaaaaca |
609 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||| ||||||| ||||||||| |
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| T |
29879084 |
tatccaataagggtcctcatgacacaactgtggattttctatctcctactacaaatatacctttcaacaaaaca |
29879011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 420 - 482
Target Start/End: Original strand, 30126325 - 30126387
Alignment:
| Q |
420 |
aacaaactcaatgacattttaatgccctaaacataaaaacttgtataaatcagtcagaagatt |
482 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
30126325 |
aacaaactcaatgacatgtcaatgccctcaacatataaacttatataaatcagtcagaagatt |
30126387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 29879146 - 29879084
Alignment:
| Q |
420 |
aacaaactcaatgacattttaatgccctaaacataaaaacttgtataaatcagtcagaagatt |
482 |
Q |
| |
|
||||||||||||||||| | ||| || | |||||| |||||| ||||||||||| |||||||| |
|
|
| T |
29879146 |
aacaaactcaatgacatgtcaataccttcaacatataaacttatataaatcagtgagaagatt |
29879084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 29879549 - 29879511
Alignment:
| Q |
385 |
atgaaaactctctgaatagtggttcatcgaagtctaaca |
423 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
29879549 |
atgaaaactctctgaatagtggttcatccaagtttaaca |
29879511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 58403 - 58527
Alignment:
| Q |
61 |
gaaatggtggttagtagcagcatgtaaattttcagctggtgtttctaactagat---gcaaaaggagtaagataataactacaaaataaataatcagtta |
157 |
Q |
| |
|
||||| |||||||||| || |||||| |||||| ||||||||||||||| ||| |||||| | |||||| ||||||||||| ||||||||||| ||| |
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|
| T |
58403 |
gaaatagtggttagtaacatcatgtatattttcggctggtgtttctaaccagaacaagcaaaatgggtaagacaataactacaacataaataatcactta |
58502 |
T |
|
| Q |
158 |
tcattctattttgatacgtctgatt |
182 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
58503 |
tcattctattttgataattctgatt |
58527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 24792132 - 24792094
Alignment:
| Q |
296 |
agggaaatgctaacgagtgcccctagggcactctttaag |
334 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24792132 |
agggaaatgttaacgagtgcccctagggcactctttaag |
24792094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 47754471 - 47754509
Alignment:
| Q |
296 |
agggaaatgctaacgagtgcccctagggcactctttaag |
334 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
47754471 |
agggaaatgttaacgagtgcccctggggcactctttaag |
47754509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 16878849 - 16878812
Alignment:
| Q |
296 |
agggaaatgctaacgagtgcccctagggcactctttaa |
333 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
16878849 |
agggaaatgttaacgagtgcccctagagcactctttaa |
16878812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 46116897 - 46116937
Alignment:
| Q |
294 |
acagggaaatgctaacgagtgcccctagggcactctttaagg |
335 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46116897 |
acaggggaatgctaacgagtgcccct-gggcactctttaagg |
46116937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 23016193 - 23016230
Alignment:
| Q |
299 |
gaaatgctaacgagtgcccctagggcactctttaaggg |
336 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
23016193 |
gaaatgctaacgagtgcccccaaggcactctttaaggg |
23016230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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