View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_high_21 (Length: 255)
Name: NF3078_high_21
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_high_21 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 28607229 - 28606987
Alignment:
| Q |
13 |
aatataaacttgagtaaattgaaagcttgtatttcttgcacaaaatcttgatcatgcattttagctgggtgtgacgattgcttttctaaaaagcatccta |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607229 |
aatataaatttgagtaaattgaaagcttgtatttcttgcacaatatcttgatcatgcattttagctgggtgtgacgattgcttttctaaaaagcatccta |
28607130 |
T |
|
| Q |
113 |
ccaaattaatccaaataattaagtgtggtttacatattttatcagattattcgaattttattgacatatagttaaataatatatcaacatataaatttaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607129 |
ccaaattaatccaaataattaagtgtggtttacatattttataagattattcgaattttattgacatatagttaaataatatatcaacatataaatttaa |
28607030 |
T |
|
| Q |
213 |
acggatgatgcaagtgaacaatatgacttgaatccttatcaaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607029 |
acggatgatgcaagtgaacaatatgacttgaatccttatcaaa |
28606987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University