View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_high_28 (Length: 212)
Name: NF3078_high_28
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_high_28 |
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| [»] scaffold0928 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5313027 - 5312832
Alignment:
| Q |
1 |
gttcaactaggttcctcaccggtgggacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
100 |
Q |
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|||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313027 |
gttcaactaggtccttcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
5312928 |
T |
|
| Q |
101 |
tttcgcatacaatcctgcctctatctcatcccatggtcattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgt |
196 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5312927 |
ttccgcatacaatcctgcctctatctcatcccatggtcattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctgt |
5312832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 54754350 - 54754155
Alignment:
| Q |
1 |
gttcaactaggttcctcaccggtgggacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
100 |
Q |
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|||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54754350 |
gttcaactaggtccttcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
54754251 |
T |
|
| Q |
101 |
tttcgcatacaatcctgcctctatctcatcccatggtcattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgt |
196 |
Q |
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| T |
54754250 |
ttccgcatacaatcctgcctctatctcatcccatggtcattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctgt |
54754155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 29515812 - 29515989
Alignment:
| Q |
16 |
tcaccggtgggacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcc |
115 |
Q |
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|||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29515812 |
tcaccggtggaacatgaacaaaatacccttaga---aattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcc |
29515908 |
T |
|
| Q |
116 |
tgcctctatctcatcccatggtcattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgt |
196 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29515909 |
tgcctctatctcatcccatggtcattattggtgactactaactaagtaggagttgaattgaagtaaccacactgtatctgt |
29515989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 53344929 - 53345029
Alignment:
| Q |
1 |
gttcaactaggttcctcaccggtgggacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
100 |
Q |
| |
|
|||||||||| | ||||||| |||| ||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53344929 |
gttcaactagatccctcaccagtggaacatgaacataatgcccttagatataattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
53345028 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
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|
| T |
53345029 |
t |
53345029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31629360 - 31629416
Alignment:
| Q |
1 |
gttcaactaggttcctcaccggtgggacatgaacaaaatacccttaaatttaattaa |
57 |
Q |
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|
|||||| || |||||||||| |||| ||||||||||||||| || ||||||||||| |
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| T |
31629360 |
gttcaattaagttcctcaccagtggatcatgaacaaaataccattgaatttaattaa |
31629416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 9147121 - 9147314
Alignment:
| Q |
1 |
gttcaactaggttcctcaccggtgggacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
100 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9147121 |
gttcaactaggtccctcactggtggaacatgaacaaaatacccttagatttaattaacggttgatcttgattaaaaataataatgtaaacatgtatacat |
9147220 |
T |
|
| Q |
101 |
tttcgcatacaatcctgcctctatctcatcccatggtcattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatct |
194 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9147221 |
ttccgcatacaatcctgcctctatctcatcccatggtcattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatct |
9147314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0928 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0928
Description:
Target: scaffold0928; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3295 - 3116
Alignment:
| Q |
1 |
gttcaactaggttcctcaccggtgggacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
100 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3295 |
gttcaactaggtccctcatcggtggaacatgagcaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacat |
3196 |
T |
|
| Q |
101 |
tttcgcatacaatcctgcctctatctcatcccatggtcattattgatgactactaactaagcaggagttgaattgaagta |
180 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3195 |
ttccgcatacaatcctgcctctatctcatcccatggtcattattggtgactactaactaagcaggagttgaattgaagta |
3116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 24565605 - 24565653
Alignment:
| Q |
14 |
cctcaccggtgggacatgaacaaaatacccttaaatttaattaacggtt |
62 |
Q |
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|||||||||||| ||||||||||||||| ||| |||||||||| |||| |
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| T |
24565605 |
cctcaccggtggaccatgaacaaaataccattagatttaattaatggtt |
24565653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 24606641 - 24606689
Alignment:
| Q |
14 |
cctcaccggtgggacatgaacaaaatacccttaaatttaattaacggtt |
62 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||||||| |||| |
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|
| T |
24606641 |
cctcaccggtggaccatgaacaaaataccattagatttaattaatggtt |
24606689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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