View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_high_29 (Length: 212)
Name: NF3078_high_29
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 2617493 - 2617315
Alignment:
| Q |
20 |
atgatgtaaagctattaggtaataaataaatgccatgataatagtaaatgagcaaggaaagttgcaggtttacaatggaaaagccataaaagtatacatc |
119 |
Q |
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| T |
2617493 |
atgatgtaaagctattaggtaataaataaatgccatgataatagtaaatgagcaaggaaagttgcaggtttacaatggaaaagccataacagtatacatc |
2617394 |
T |
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| Q |
120 |
caaaagaacaaggaatcgatgttgatttcatgagaaagcaaaaaactagacatggtcggaattagcataaggagaatac |
198 |
Q |
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| T |
2617393 |
caaaagaacaaggaatcgatgttgatttcatgagaaagcaaaaaactagacatggtcggaattagcataaggagaatac |
2617315 |
T |
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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 34466409 - 34466532
Alignment:
| Q |
58 |
taatagtaaatgagcaaggaaagttgcaggtttacaatggaaaagccataaaagtatacatccaaaagaacaaggaatcgatgttgatttcatgagaaag |
157 |
Q |
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| T |
34466409 |
taataataaatgagcaagggaagttgcaggttaa-agtggaaaagccataaaaatatacatccaaaagaacaaggaatcgacgttgatttcatgagaaag |
34466507 |
T |
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| Q |
158 |
caaaaaactagacatggtcggaatt |
182 |
Q |
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| T |
34466508 |
aagaaagctaaacatggttggaatt |
34466532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 10351386 - 10351496
Alignment:
| Q |
43 |
aaataaatgccatgataatagtaaatgagcaaggaaagttgcaggtttacaatggaaaagccataaaagtatacatccaaaagaacaaggaatcgatgtt |
142 |
Q |
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| T |
10351386 |
aaataaaggtcacgataataacaaatgagcaagaaaagttgcaggtt-acagtgaaaaagccataaaagtatacattcaaaagaacaaggaatcgatgtt |
10351484 |
T |
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| Q |
143 |
gatttcatgaga |
154 |
Q |
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| T |
10351485 |
gatttcatgaga |
10351496 |
T |
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