View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_high_6 (Length: 436)
Name: NF3078_high_6
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 42336657 - 42336228
Alignment:
| Q |
1 |
gtaccgagtaatgggaaaatttcctttttgttccaaaaatagcatcatcagcgtgaaatcaaataagaacaaagtcctatata--atactatcaagtata |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
42336657 |
gtaccgagtaatgggaaaatttcctttttgttccaaaaatagcatcatcagcgtgaaatcaaataagagcaaagtcctatatataatactatcaagtata |
42336558 |
T |
|
| Q |
99 |
agccttttatcatcacattgcaaccctagcaaacnnnnnnnnnnnncaccttgttttcaattttcaaaatgaatctcaacattgtgttctctcttgcatt |
198 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336557 |
agcctttcatcatcacattgcaaccctagcaaacaaaaaagaaaaacaccttgttttcaattttcaaaatgaatctcaacattgtgttctctcttgcatt |
42336458 |
T |
|
| Q |
199 |
catctgcattgttatcgccggtgtcggaggccagtcgccttcaccggcaccagcccctgctgggtcttctccagcttcatctcccacatcaccagcccca |
298 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
42336457 |
catctgcattgttatcgccggtgtcgtaggccagtcgccttcaccggcaccagcccccgctggttcttctccagcttcatctcccacatcaccaacccca |
42336358 |
T |
|
| Q |
299 |
tctcctaaccctaacgcgccttcaccggccccattttcatctccaacaccagcccccgctagcacttcaccggccccatctccttccaaccctccctcac |
398 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336357 |
tctcctaaccctaatgcgccttcaccggccccattttcatctccaacaccagcccccgctagcacttcaccggccccatctccttccaaccctccctcac |
42336258 |
T |
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| Q |
399 |
atgcaccttcaccatcgccactttcatctc |
428 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
42336257 |
atgcaccttcaccatcgccactttcatctc |
42336228 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 19792346 - 19792394
Alignment:
| Q |
183 |
tgttctctcttgcattcatctgcattgttatcgccggtgtcggaggcca |
231 |
Q |
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|||||||| ||||| |||||||||||||| |||||| |||| ||||||| |
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| T |
19792346 |
tgttctcttttgcactcatctgcattgttgtcgccgctgtcagaggcca |
19792394 |
T |
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