View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_high_9 (Length: 349)
Name: NF3078_high_9
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 52556753 - 52556888
Alignment:
| Q |
29 |
cttcaattatacattacatggttgaccacatcatcaaagagtatgatattacttttgaatttattaagacaaggatgagatggaacgaattttatcattt |
128 |
Q |
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| T |
52556753 |
cttcaattatacattacatggttgaccacatcatcaaagagtattatattacttttgaatttattaagacaaggatgagatggaacgaattttatcattt |
52556852 |
T |
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| Q |
129 |
tattaatattagtagtaaacaaaagcatccagcaat |
164 |
Q |
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| T |
52556853 |
tattaatattagcagtaaacaaaagcatccagcaat |
52556888 |
T |
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Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 52556940 - 52557079
Alignment:
| Q |
192 |
caaacataaaaagttaaattgatctagagacagtgccatggccacacgttcgttataaaataggatgtgaggaagagttaagctgcatcaacatagagtg |
291 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52556940 |
caaacataaaaaaataaattgatctagagacagtgccatggccacacgttcgttataaaataggatgtgaggaagagttaagctgcatcaacatagagtg |
52557039 |
T |
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| Q |
292 |
atgaatattcattctcatcattttggaattatggctatat |
331 |
Q |
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| T |
52557040 |
atgaatattcattgtcatcattttggaattatggctatat |
52557079 |
T |
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