View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_11 (Length: 376)
Name: NF3078_low_11
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 52049941 - 52050189
Alignment:
| Q |
1 |
acctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttggtgtacgtaccctctatcagattcgtggttaataattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52049941 |
acctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttgttgtacgtaccctctatcagattcgtggttattaattt |
52050040 |
T |
|
| Q |
101 |
cgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaattaccacctaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52050041 |
cgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaattaccacctaaac |
52050140 |
T |
|
| Q |
201 |
agaacnnnnnnnntatacaacatattttattctaagttcattgccttag |
249 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52050141 |
agaacaaaaaaaatatacaacatattttattctaagttcattgccttag |
52050189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 52050246 - 52050295
Alignment:
| Q |
311 |
gaagtggattacatagttttcttgaatatccaatcgcacccctggagatt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52050246 |
gaagtggattacatagttttcttgaatatccaatcgcacccctggagatt |
52050295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University