View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_12 (Length: 369)
Name: NF3078_low_12
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 4853720 - 4853375
Alignment:
| Q |
1 |
agtcgagtgagaagaattgggttgcttgagactttaaaagaacattattttcggtcatctttttctactcactttcttctttcccacaaaacaaaaccaa |
100 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4853720 |
agtctagtgtgaagaattgggttgcttgagactttaaacgaacattattttcggtcatctttttctactcactttcttcttttccacaaaacaaaaccaa |
4853621 |
T |
|
| Q |
101 |
tttaaaaaatgaaaatctaattaaacatttgtttatcacgctatataatattgtaaatgatgaacaattagctctttattaactcgaaatggatcttgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4853620 |
tttaaaaaatgaaaatctaattaaacatttgtttatcacgctatataatattgtaaatgatgaataattagctctttattaactccaaatggatcttgca |
4853521 |
T |
|
| Q |
201 |
tacgagatatccaacattcatgcattcggtatatcaatggtcgttcgatcgatatacatgactaaattcatgttttgcattgcaaattttaaaattaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4853520 |
tacgagatatccaacattcatgcattcggtatatcaatggtcgttcgatcgatatac--gactaaattcatgttttgcatttcaaattttaaaattaaaa |
4853423 |
T |
|
| Q |
301 |
tttgcattttgtaaacttaagatgaatgcgtgaatgcaggttccccgt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4853422 |
tttgcattttgtaaacttaagatgaatgcgtgaatgcgggtttcccgt |
4853375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University