View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_15 (Length: 347)
Name: NF3078_low_15
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 23258699 - 23258522
Alignment:
| Q |
16 |
gcgcaatcaataacatgtgggtttgaaagggatggagagccaaaaagagtaaattcctctgaatcatataataaccttgtatagtgacgcagcaatagat |
115 |
Q |
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| T |
23258699 |
gcgcaatcagtaacatgtgggtttgaaagggatggagagccaaaaatagtaaattcctctgaatcatataataaccttgtatagtgacgcagc-gtagat |
23258601 |
T |
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| Q |
116 |
attttgataacatgcct--taaaataaaataaaatagaaagaggatattttaataaccttgttcattttgagccaagtg |
192 |
Q |
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| T |
23258600 |
attttcataacatgccttataaaataaaataaaatagaaagaggatattttgataaccttgttcattttgagccaagtg |
23258522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 23258461 - 23258418
Alignment:
| Q |
254 |
ttgataaccaatcacaaagcctccaacttgggaaatagctcact |
297 |
Q |
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| T |
23258461 |
ttgataaccaatcacacagcctccaacttgggaaatagctcact |
23258418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 23266974 - 23266934
Alignment:
| Q |
254 |
ttgataaccaatcacaaagcctccaacttgggaaatagctc |
294 |
Q |
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| T |
23266974 |
ttgataaccaatcacaaagcctccaacttaggaaatagctc |
23266934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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