View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3078_low_16 (Length: 334)

Name: NF3078_low_16
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3078_low_16
NF3078_low_16
[»] chr4 (4 HSPs)
chr4 (1-314)||(23819507-23819820)
chr4 (3-311)||(23832606-23832910)
chr4 (1-312)||(23828757-23829074)
chr4 (12-284)||(23824838-23825108)
[»] chr2 (3 HSPs)
chr2 (10-163)||(41459069-41459222)
chr2 (10-163)||(41442287-41442440)
chr2 (10-101)||(41448723-41448814)
[»] chr5 (1 HSPs)
chr5 (10-142)||(34150303-34150435)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 23819507 - 23819820
Alignment:
Q  1 taatgatgtaacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||    
T  23819507 taataatgtaacaggaggctcatattttcaacctctttcttggagcctccggttgaaggttgctgttggtgctgccaaaggccttgcatttcttcacggt 23819606  T
Q  101 gctcaaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819607 gctcaaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttat 23819706  T
Q  201 ttatgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgat 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819707 ttatgcattgtatctgaaaatttcctttttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgat 23819806  T
Q  301 aaaagtcatgtcac 314  Q
    ||||||||||||||    
T  23819807 aaaagtcatgtcac 23819820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 23832606 - 23832910
Alignment:
Q  3 atgatgtaacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtgc 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23832606 atgatttaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtac 23832705  T
Q  103 tcaaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattt 202  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||  |||||||||||  |||||||| |||| |||| ||||||||    
T  23832706 tcaaacaaaagcaatgtaccgcgatttccagacttcaaatgtcttgctagattccgta--tgtctttttgt--acacacatgaatatattacgtttattt 23832801  T
Q  203 atgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataa 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||||||    
T  23832802 atgtattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttcaaattttggcctggcaaagaacttgtccctggttgataa 23832901  T
Q  303 aagtcatgt 311  Q
    |||||||||    
T  23832902 aagtcatgt 23832910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 23828757 - 23829074
Alignment:
Q  1 taatgatgtaacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||      
T  23828757 taatgatgtaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgctaaaggccttacatttcttcgcaac 23828856  T
Q  101 gctcaaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacac------acacataaatacattat 194  Q
    ||| |||||||||  |  ||||| |||||||| || |||||||||||||||||||| ||||||||| |||| |||||      |||||| |||| |||||    
T  23828857 gctgaaacaaaaggaaaataccgcgatttcaatacctcaaatgtcttgctagattcagtatgtgtccttttctacacacaaaaacacattaatatattat 23828956  T
Q  195 gtttatttatgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacg 294  Q
     |||||||||| ||  |||||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||| |   |||||| |  ||||| |    
T  23828957 atttatttatgtatcatatctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggtccatg 23829056  T
Q  295 gttgataaaagtcatgtc 312  Q
    ||||||||||||||||||    
T  23829057 gttgataaaagtcatgtc 23829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 23824838 - 23825108
Alignment:
Q  12 caggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtgctcaaacaaa 111  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||  |||||||    
T  23824838 caggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgccaaatgtcttgcattccttcacagtgccgaaacaaa 23824937  T
Q  112 agcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttatttatgcattgt 211  Q
    | |||| ||||   |||| |||||||||||| ||||||| ||||| |||||||||  ||||||||  ||||| | || |||||||||||||| | |   |    
T  23824938 atcgatttaccaaaatttgaagacttcaaatatcttgctggattcggtatgtgtccatttgtacagccacatgagtaaattatgtttatttaagtaacat 23825037  T
Q  212 atctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaagga 284  Q
     | ||||| |||||  | ||| ||||| ||||||||||||||| ||||| | ||||||||| |||||||||||    
T  23825038 gtttgaaagtttcc--gctgatttgatgacagaattataatgcgaaactctttaattttgggctggcaaagga 23825108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 41459069 - 41459222
Alignment:
Q  10 aacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtgctcaaaca 109  Q
    ||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||  ||||||||||| ||||||||||| ||||||||| |||      
T  41459069 aacaggaggatcatatttccaacctctttcatggagcctccgtctgaaggttgctcttgacgctgccaaagggcttgcatttctgcacagtgctgaaaat 41459168  T
Q  110 aaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgt 163  Q
    |||| ||| ||  | ||||| |||||||||||||||||| | ||||| ||||||    
T  41459169 aaagtgatatatagagattttaagacttcaaatgtcttgttggattctgtatgt 41459222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 41442287 - 41442440
Alignment:
Q  10 aacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtgctcaaaca 109  Q
    ||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||  ||||||||||| ||||||||||| ||||||| | |||      
T  41442287 aacaggaggatcatattttcaacctctttcatggagccttcgtctgaaggttgctcttgacgctgccaaagggcttgcatttctgcacagtgatgaaaat 41442386  T
Q  110 aaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgt 163  Q
    |||| ||| ||  | ||||| |||||||||||| ||||| | ||||||||||||    
T  41442387 aaagtgatatatagagattttaagacttcaaatatcttgttggattccgtatgt 41442440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 41448723 - 41448814
Alignment:
Q  10 aacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtg 101  Q
    ||||| ||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||| ||||| ||||  |||||||    
T  41448723 aacagaaggctcatattttcaacctctctctcggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcgtttcagcacagtg 41448814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 34150303 - 34150435
Alignment:
Q  10 aacaggaggctcatattttcaacctctttcttggagcctccgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacagtgctcaaaca 109  Q
    ||||||||  || ||||||||||| |||||||||||| ||||  ||||||||||||||| |||||| || || ||||||| ||||||||| | | || ||    
T  34150303 aacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatgaagca 34150402  T
Q  110 aaagcgatgtaccgtgatttcaagacttcaaat 142  Q
    |||| ||| || ||||| || || |||||||||    
T  34150403 aaagtgatatatcgtgactttaaaacttcaaat 34150435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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