View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_18 (Length: 327)
Name: NF3078_low_18
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 45683010 - 45682755
Alignment:
| Q |
1 |
gcttctcagttcatccaaaaggaacagattcctcggtttaacttattacgatatattatataaaatatacaaaatactgggagttcaaacttaagtcaaa |
100 |
Q |
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| T |
45683010 |
gcttctcagttcatccaaaaggaacagattccttggtttaacttattacgatatattatataaaatatacaaaatactgggagttcaaacttaagtcaaa |
45682911 |
T |
|
| Q |
101 |
tttaattcatctaaaggtttgagtagtggaattagctttttctagatgtaaaggaaacctaacatagatccataatgggtgcaacccttccccagattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45682910 |
tttaattcatctaaaggtttgagtagtggaattagctttttctagatgtaaaggaaacctaacatagatccataatgggtgcaacccttccccagattca |
45682811 |
T |
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| Q |
201 |
ttcatgatgggattattacaagaccaagttacccttttacgcacccctacccctac |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45682810 |
ttcatgatgggattattacaagaccaagttacccttttacgcacccctacccctac |
45682755 |
T |
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