View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_19 (Length: 325)
Name: NF3078_low_19
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 23258069 - 23258364
Alignment:
| Q |
19 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23258069 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccgaattcggagtt |
23258168 |
T |
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| Q |
119 |
gacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23258169 |
gacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattg |
23258268 |
T |
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| Q |
219 |
ttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23258269 |
ttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttga |
23258364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 23247681 - 23247974
Alignment:
| Q |
19 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagtt |
118 |
Q |
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|||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| |||||||| | ||||| || ||||| || ||| | | |
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| T |
23247681 |
cacacctctatagaccgggtggcgagtttccttaaatatcttcctccctgctcgcttcttcgggttacttgatgctaaccgcacctcagaacccggtgat |
23247780 |
T |
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| Q |
119 |
gacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattg |
218 |
Q |
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| T |
23247781 |
gatgcgtcgaagggagaaaaatcttttgaggaaatggagtgtgaataggaagagttgttagtactaatcatatgtatgtgttggatagagtggaaaatgg |
23247880 |
T |
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| Q |
219 |
ttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttga |
314 |
Q |
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| T |
23247881 |
ttttgagaggtaaagtgggaattg--gagagagtttgttttaagagaatgaagagtaaggtgtgttatatatatagggaagcattgttgtgtttga |
23247974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 23252093 - 23252386
Alignment:
| Q |
19 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagtt |
118 |
Q |
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| T |
23252093 |
cacacctctatagacagggtgacgagtttccttaaatatcttcctccccgctctcttcttcgggttgcttgatgctaaccgcacctcagaatccggtgat |
23252192 |
T |
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| Q |
119 |
gacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattg |
218 |
Q |
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|| ||| | | |||| | || |||||| |||||| |||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||| | |
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| T |
23252193 |
gatgcgtcgaagggagaaaaatcttttgaggaaatggagtgtgaataggaagagttgttagtacttatcatatgtatgtgttggatagagtggaaaatgg |
23252292 |
T |
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| Q |
219 |
ttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttga |
314 |
Q |
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|||| ||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23252293 |
ttttgagaggtaaagtggtaattg--gagagagtttgttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgtgtttga |
23252386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 23266625 - 23266812
Alignment:
| Q |
20 |
acacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttg |
119 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||| |||| | | ||| || |
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| T |
23266625 |
acacctctatacaccgggtggcgagtttccttgaatatcttcctccctgctctcttcttcgggttactagctgctaatcgtatctccgattccggtaatg |
23266724 |
T |
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| Q |
120 |
acatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
207 |
Q |
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| T |
23266725 |
agttatagtaggaagaagatgcttctgaggaaatggagtgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
23266812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 23266804 - 23266867
Alignment:
| Q |
240 |
ttggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcata |
303 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
23266804 |
ttggagagatagttgtttttaagagaatgaagagtaaggtgtgttacatatatagtgaagcata |
23266867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 23587227 - 23587291
Alignment:
| Q |
35 |
gggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcg |
99 |
Q |
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| T |
23587227 |
gggtggcgagtttccttgaacttcttcctccctgcacgcttcttcggggtagttgccgctaatcg |
23587291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 23507065 - 23507124
Alignment:
| Q |
19 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctt |
78 |
Q |
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|||||| ||||||| ||||||||||||||||||||| ||||||||||| | |||||||| |
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| T |
23507065 |
cacacccctatacaccgggtggcgagtttccttgaatttcttcctccctccacgcttctt |
23507124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 23391524 - 23391586
Alignment:
| Q |
19 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgg |
81 |
Q |
| |
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|||||| ||||| | |||||||||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
23391524 |
cacacccctatataccgggtggcgagtctccttgaacttcttcctccctgcacgcttctttgg |
23391586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 23583328 - 23583390
Alignment:
| Q |
20 |
acacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttggg |
82 |
Q |
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||||| ||||| | |||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
23583328 |
acacccctatagaccgggtggcgagtctccttgaacttcttcctccctgcacgcttctttggg |
23583390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 23290055 - 23290132
Alignment:
| Q |
19 |
cacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaa |
96 |
Q |
| |
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|||||||||||||| |||||||||||| ||||| || |||||||||||||| | || |||||| ||| |||||||| |
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| T |
23290055 |
cacacctctatacaccgggtggcgagtctccttaaacttcttcctccctgctggtttttttgggcaactcgccgctaa |
23290132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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