View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_2 (Length: 789)
Name: NF3078_low_2
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 303 - 773
Target Start/End: Original strand, 49535237 - 49535710
Alignment:
| Q |
303 |
taaagaaatgattaatagaattaaaaatttgaaagtaagaatttcaatagggtcttatatttaggaaggatgtagtataatttgaggtgaagagcctttt |
402 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
49535237 |
taaaaaaatgattaatagagttaaaaatttgaaagtaagaatttcaatagggtcttatatttaggacggatgtagtataat--gaggtgaagagcctttt |
49535334 |
T |
|
| Q |
403 |
tt-gtgtgtgtgaaaatcatgctacagtatgtcctaacatccttcatttatgatcgtggaaatgatacaaggtcatctcaacaatgtctttctctacgta |
501 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49535335 |
tttgtgtgtgtgaaaatcatgctacagtatgtcctaacatccttcatttatgatcgtggaaatgatacaaggtcatctcaacaatgtctttctctatgta |
49535434 |
T |
|
| Q |
502 |
cttttgtggggaactagtacaatttttggaa----taattgatttctacaaatttcgttgatggctatacataatacatcagcctgtatgaagttttcac |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49535435 |
cttttgtggggaactagtacaatttttggaaaaattaattgatttgtacaaatttcgttgatggctatacataatacatcagcctgtatgaagttttcac |
49535534 |
T |
|
| Q |
598 |
tctgaactgtgaactgttattatatcagtcaacgggaaggagtgagttttattcaaaaagagcagtagttaccaattaatgtagcttttcactctaagct |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49535535 |
tctgaactgtgaactgttattatatcagtcaacgggaaggagtgagttttattcaaaaagagcagtagttaccaattaatgtaggttttcactctaagct |
49535634 |
T |
|
| Q |
698 |
gttggcacacacatagacaaagtacatcttaacatacaaaaaagttcaaactaaagtcatttcataaaggaagcaa |
773 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49535635 |
gttggcacacacatagacaaagtacatcttaacatacaaaaaagttcaaactaaagtcatttcataaaggaagcaa |
49535710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 49534899 - 49535189
Alignment:
| Q |
9 |
agcataggtcataggtgccacgaagtctacaatatcataaagaagaaattgacataaaggaggagatgaaacaggtagctgcttatcaataaatactccc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49534899 |
agcataggtcataggtgccacgaagtctacaatatcataaagaagaaattgacataaaggaggagatgaaacaggtagctgcttatcaataaatactccc |
49534998 |
T |
|
| Q |
109 |
atgcatcatggagaaaagtaatacatactggtgttgccatcaatgagattagactttttatcagtacattgtccctaaatataggagttcgtcgactaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49534999 |
atgcatcatggagaaaagtaatacatactggtgttgccatcaatgagattagactttttatcagtacattgtccctaaatataggagttcgtcgactaaa |
49535098 |
T |
|
| Q |
209 |
tcaagagaattaagaaggttgatgatattggtatgaaatttattgacaacttgtattgttttagtttactcttttaaaagataataatgtttcc |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49535099 |
tcaagagaattaagaaggt---tgatattggtatgaaatttattgacaacttgtattgttttagtttactcttttaaaagataataatgtttcc |
49535189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University