View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_20 (Length: 322)
Name: NF3078_low_20
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 28614682 - 28614976
Alignment:
| Q |
12 |
gccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagcaactggaatagacaaacagatatattcaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| || || ||||| |
|
|
| T |
28614682 |
gccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattctggaaagcaactggaatagacaaagcaatttactcaaa |
28614781 |
T |
|
| Q |
112 |
tggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgag |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28614782 |
tggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgtggtagtgccggaaaaggcaccaaaactgattggatgatgcatgag |
28614881 |
T |
|
| Q |
212 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaacgtacataa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28614882 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaacttacataa |
28614976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 28629207 - 28629493
Alignment:
| Q |
12 |
gccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagcaactggaatagacaaacagatatattcaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28629207 |
gccaaagaggaagaaaatataggaacagcgttagaccaaatagagtgactggctctggattctggaaagcaactggaatagacaaagcaatatactcaaa |
28629306 |
T |
|
| Q |
112 |
tggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgag |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28629307 |
tggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgcggtagtgccggaaaaggcaccaaaactgattggatgatgcatgag |
28629406 |
T |
|
| Q |
212 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaac |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28629407 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgctgattatgctcatgaagctgtaagtaac |
28629493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 39633497 - 39633562
Alignment:
| Q |
16 |
aagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagc |
81 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||||| || || ||||||||||||||||| |
|
|
| T |
39633497 |
aagaggaagaaaatataggaacagcataaggcctaatagagtgacaggatctggattttggaaagc |
39633562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 39633633 - 39633697
Alignment:
| Q |
155 |
gtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgagtttcgtct |
219 |
Q |
| |
|
||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
39633633 |
gtttattaccgtggaagtgcagggaaaggcaccaaaactgattggatgatgcatgaatttcgtct |
39633697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University