View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_23 (Length: 286)
Name: NF3078_low_23
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 28606714 - 28606461
Alignment:
| Q |
18 |
agctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgttgcaagatgtttttgtagtag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606714 |
agctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgttgcaagatgtttttgtagtag |
28606615 |
T |
|
| Q |
118 |
ttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgttttaggtaggcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606614 |
ttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgttttaggtaggcag |
28606515 |
T |
|
| Q |
218 |
catgtgtagtatctaacgttggatccactgtggggtatagtctgtggaccaaat |
271 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606514 |
catgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaat |
28606461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 28636499 - 28636246
Alignment:
| Q |
18 |
agctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgttgcaagatgtttttgtagtag |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636499 |
agctgccatttttttcacataaggtgatgttcttggatcagtggctaattcttcatccacagttagaagacccttatgttgcaagatgtttttgtagtag |
28636400 |
T |
|
| Q |
118 |
ttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgttttaggtaggcag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28636399 |
ttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgttttaggtaggtag |
28636300 |
T |
|
| Q |
218 |
catgtgtagtatctaacgttggatccactgtggggtatagtctgtggaccaaat |
271 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636299 |
catgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaat |
28636246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 28664069 - 28663819
Alignment:
| Q |
18 |
agctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgttgcaagatgtttttgtagtag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28664069 |
agctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgttgcaagatgtttttgtagtag |
28663970 |
T |
|
| Q |
118 |
ttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgttttaggtaggcag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||||| | ||||| |||||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
28663969 |
ttgttgtcaattatcattggtgtttttctatcatttcttgcatatagaacagcatttggatctggatttggtgttgggcatctaagttttagataggcag |
28663870 |
T |
|
| Q |
218 |
catgtgtagtatctaacgttggatccactgtggggtatagtctgtggacca |
268 |
Q |
| |
|
||| ||| | |||| | |||| ||||| |||||||||||||| ||||||| |
|
|
| T |
28663869 |
catatgtggggtctagctttgggtccaccgtggggtatagtctatggacca |
28663819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 28656991 - 28656743
Alignment:
| Q |
20 |
ctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgttgcaagatgtttttgtagtagtt |
119 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28656991 |
ctgccattttttgtacataaggtgatgttattgggtcagtggctagttcttcatccacagttagaagacccttatgttgcaaaatgttcttgtagtagtt |
28656892 |
T |
|
| Q |
120 |
gttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgttttaggtaggcagca |
219 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | ||| |||||| |||| || ||||||||||||||| || || |
|
|
| T |
28656891 |
gttgtcaattatcaatggagtttttagatcattccttacatattggacagcttttgcctttgggtttggttttggacatctacgttttaggtagacaaca |
28656792 |
T |
|
| Q |
220 |
tgtgtagtatctaacgttggatccactgtggggtatagtctgtggacca |
268 |
Q |
| |
|
| ||||| |||| |||||| |||||| | ||||||||||||||||||| |
|
|
| T |
28656791 |
tatgtagggtctagcgttgggtccactatagggtatagtctgtggacca |
28656743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University