View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_27 (Length: 272)
Name: NF3078_low_27
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 30048742 - 30048951
Alignment:
| Q |
18 |
gaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgcaaataagaattggttgaaagaaatcaacactagaagaaaca |
117 |
Q |
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| T |
30048742 |
gaaagtcgtaagtcagatagatggtttttagataatggttgttctaatcatatgactgcaaataagaattggttgaaagaaatcaacacgggaagaaaca |
30048841 |
T |
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| Q |
118 |
gcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30048842 |
gcaaggtgaagcttgcatatcatagaacactagttggaaaaggcatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgt |
30048941 |
T |
|
| Q |
218 |
gatttatatt |
227 |
Q |
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|||||||||| |
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| T |
30048942 |
gatttatatt |
30048951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 15065549 - 15065483
Alignment:
| Q |
25 |
gcaagtcagatagatggtttttagataatggttgttctaatcatatgactgcaaataagaattggtt |
91 |
Q |
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| T |
15065549 |
gcaattcagaaagatggttcttagttactggttgttctaatcatatgactgaaaataaggattggtt |
15065483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 40370482 - 40370319
Alignment:
| Q |
30 |
tcagatagatggtttttagataatggttgttctaatcatatgactgcaaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagc |
129 |
Q |
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| T |
40370482 |
tcagaaagttggttcttagatactggttgttctaatcatatgactggaactcagacattgttaagagaagtggattctagaagaaacacaaaggtgaaac |
40370383 |
T |
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| Q |
130 |
ttgcatatcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatgg |
193 |
Q |
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||||| |||||||| |||||| | |||| ||||| || |||| ||||||| |||||||||| |
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| T |
40370382 |
ttgcagatcatagagtcttagttgcagaaggaatggggaacattgctattgaaggaaagaatgg |
40370319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 15065438 - 15065378
Alignment:
| Q |
136 |
atcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaa |
196 |
Q |
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|||||||||||||||||| | |||| ||| | |||||||||||||| |||||| |||||| |
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| T |
15065438 |
atcatagaacactagttgcagaaggaatgaggaagattgttattgacggaaagagtggaaa |
15065378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 17784848 - 17784785
Alignment:
| Q |
25 |
gcaagtcagatagatggtttttagataatggttgttctaatcatatgactgcaaataagaattg |
88 |
Q |
| |
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|||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |
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|
| T |
17784848 |
gcaattcagaaagatggtttttagatactggttgttctaatcatatgactggaaataaggattg |
17784785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 41946733 - 41946783
Alignment:
| Q |
25 |
gcaagtcagatagatggtttttagataatggttgttctaatcatatgactg |
75 |
Q |
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|||| ||||| || ||||| ||||||| ||||||||||||||||||||||| |
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| T |
41946733 |
gcaattcagaaagttggttcttagatattggttgttctaatcatatgactg |
41946783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 28647833 - 28647878
Alignment:
| Q |
30 |
tcagatagatggtttttagataatggttgttctaatcatatgactg |
75 |
Q |
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||||| || ||||| ||||||| ||||||||||||||||||||||| |
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| T |
28647833 |
tcagaaagttggttcttagatactggttgttctaatcatatgactg |
28647878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 23255072 - 23255132
Alignment:
| Q |
136 |
atcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaa |
196 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| || |||| ||||||| ||||||||||||| |
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|
| T |
23255072 |
atcatagaacactagttgcagaaggaatggggaatattgctattgaaggaaagaatggaaa |
23255132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 27570958 - 27570804
Alignment:
| Q |
39 |
tggtttttagataatggttgttctaatcatatgactgcaaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatc |
138 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||| || |||| ||||| | |||| | | || ||||||||| |||||||| |||||| || |
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| T |
27570958 |
tggttcttagatactggttgttctaatcatatgactggaaccaagacatggttaagagaagtggattctggaagaaacacaaaggtgaaacttgcagata |
27570859 |
T |
|
| Q |
139 |
atagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatgg |
193 |
Q |
| |
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||||| |||||| | |||| ||||| || |||| ||||||| |||||||||| |
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| T |
27570858 |
atagagtcttagttgcagaaggaatggggaatattgctattgaaggaaagaatgg |
27570804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 23254961 - 23255018
Alignment:
| Q |
25 |
gcaagtcagatagatggtttttagataatggttgttctaatcatatgactgcaaataa |
82 |
Q |
| |
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|||| ||||| |||||||| ||||||| | |||||||||||||||||| || |||||| |
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|
| T |
23254961 |
gcaattcagaaagatggttgttagatactagttgttctaatcatatgattggaaataa |
23255018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 22930447 - 22930349
Alignment:
| Q |
119 |
caaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgt |
217 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||| | |||| ||||||||||| ||||||| |||||||| ||| |||| | |||||| ||||||| |
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| T |
22930447 |
caaggtgaagcttgttgatcatacaacattagttgcagaaggcatgggaaagatatctattgaaggaaagaattgaagattagttgtaattgaagatgt |
22930349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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