View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_28 (Length: 258)
Name: NF3078_low_28
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_28 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 31683667 - 31683922
Alignment:
| Q |
3 |
gaccaaatcattcccaaaaatcacattttcaacatggagataatgttagccatataataagcaactagttgatcgaattcaagtagcttgcaagtatgga |
102 |
Q |
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| T |
31683667 |
gaccaaatcattcccaaaaatcacattttcaacatggagataatgttagccatataataagcaactagttgatcgaattcaagtagctagcaagtatgga |
31683766 |
T |
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| Q |
103 |
atcccaacatggagataatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattccatgtctcttaaatgt |
202 |
Q |
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| T |
31683767 |
atcccaacatggagataatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattccatgtctcttaaatgt |
31683866 |
T |
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| Q |
203 |
gtagtcgacttaggcataccagatatcatacacaattatggtagacctatgtcact |
258 |
Q |
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| T |
31683867 |
gtagtcgacttaggcataccagatatcatacacaattatggtagacctatgtcact |
31683922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 31702292 - 31702446
Alignment:
| Q |
92 |
gcaagtatggaatcccaaca---tggagataatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattcca |
188 |
Q |
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|||||||||||||||||| | || ||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31702292 |
gcaagtatggaatcccaaaaaaatgaagaaaatgttacttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcataaattcca |
31702391 |
T |
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| Q |
189 |
tgtctcttaaatgtgtagtcgacttaggcataccagatatcatacacaattatgg |
243 |
Q |
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| T |
31702392 |
tgtcccttaaatgtgtggttgatttaggcatacctgatatcatacacaattatgg |
31702446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 31710714 - 31710880
Alignment:
| Q |
77 |
gaattcaagtagcttgcaagtatggaatcccaacatggagataatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaact |
176 |
Q |
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||||||||||||| | |||||||||||||||| || ||| | |||||||| ||||||||||||||||||||||| ||||||| ||||| || |||| |
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| T |
31710714 |
gaattcaagtagcaagtaagtatggaatcccaaaatatagagcaggttgcttccaatttgctcaaagctcaaagccatgtatggaatcacatgtttaact |
31710813 |
T |
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| Q |
177 |
tcataaattccatgtctcttaaatgtgtagtcgacttaggcataccagatatcatacacaattatgg |
243 |
Q |
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| T |
31710814 |
tcataaattccatgtcacttaaatgtgtagttgacttaggcataccagatatcatacacaactatgg |
31710880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 31734132 - 31734280
Alignment:
| Q |
92 |
gcaagtatggaatcccaacat---ggagataatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattcca |
188 |
Q |
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|||||||||||||||||| || | ||| ||||||||||| ||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| | |
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| T |
31734132 |
gcaagtatggaatcccaaaataatgaagagaatgttgcttccaatttgctcaaggctcaaagtcacgtatggaatcacattttcaacttcataaattcaa |
31734231 |
T |
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| Q |
189 |
tgtctcttaaatgtgtagtcgacttaggcataccagatatcatacacaa |
237 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
31734232 |
tgtcgcttaaatgtgtagttgacttaggcataccagatattatacacaa |
31734280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 31713768 - 31713878
Alignment:
| Q |
133 |
tttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattccatgtctcttaaatgtgtagtcgacttaggcataccagatatcata |
232 |
Q |
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|||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| |
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| T |
31713768 |
tttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctgatattata |
31713867 |
T |
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| Q |
233 |
cacaattatgg |
243 |
Q |
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| T |
31713868 |
cacaactatgg |
31713878 |
T |
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