View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_3 (Length: 631)
Name: NF3078_low_3
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 74 - 620
Target Start/End: Original strand, 24134605 - 24135151
Alignment:
| Q |
74 |
tcatacaaattgaaaagttggaagatttaaactttctctaccatctagagtgagcttagtccatcatatatagggaaaggcctaatggcatgatagtgtt |
173 |
Q |
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| T |
24134605 |
tcataaaaattgaaaagttggaagatgtaaactttctctaccatctagagtgagcttagtccatcatatatagggaaaggcctaatggcatgatagtgtt |
24134704 |
T |
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| Q |
174 |
atctctgtttaaaaatccatatgtagggaaagtcctaatgacatgctatctctatattttaaaa-aatccagacacactttctagtattattgctacttt |
272 |
Q |
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| T |
24134705 |
atctctgtttaaaaatccatatgtagggaaagtcctaatgacatgttatctctatattttaaaaaaatccagacacgctttctagtattattgctacttt |
24134804 |
T |
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| Q |
273 |
ctgtagcatagcagaggcttgggcccctgtagggatacacctagcttcacctctggctttatacttagttattccctaaatgctactgaccatattttcc |
372 |
Q |
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| T |
24134805 |
ctgtagcatagcagaggcttgggcccctgtagggatacacctagcttcacctctggctttatgcttagttattccctaaatgctactgaccatattttcc |
24134904 |
T |
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| Q |
373 |
caaccttttattccttctaatctaatgttgacgttctatattaggggtttaacaaagtgagtttgtgcgagttttaggaggtcaaattgagggttggatg |
472 |
Q |
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| T |
24134905 |
caaccttttattccttctaatctaatgttgacgttctatattaggggtttaacaaagtgagtttgtgcgagttttaggaggtcaaattgagggtt-gatg |
24135003 |
T |
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| Q |
473 |
gactttagatctgattaatcatttatccaatatatccatggcatgtttagtggatacatgtcatggatggatttccaacccgccattcaaattaattata |
572 |
Q |
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| T |
24135004 |
gactttagatctgattaatcatttatccaatatatccatggcatgtttagtggatacatgtcatggatggatttccaacccgccattcaaattaattata |
24135103 |
T |
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| Q |
573 |
ttttttgcattttaaatcgattatcgatccccccgttctctattgatg |
620 |
Q |
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| T |
24135104 |
ttttttgcattttaaatcgattatcgatccccccgttctctattgatg |
24135151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 24134540 - 24134583
Alignment:
| Q |
5 |
acacaagagaaaacagaaaatagcaactagtatctgttgaacac |
48 |
Q |
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| T |
24134540 |
acacaagagaaaacagaaaagagcaactagtaacttttgaacac |
24134583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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