View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_30 (Length: 252)
Name: NF3078_low_30
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_30 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 28607010 - 28606784
Alignment:
| Q |
13 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
112 |
Q |
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| T |
28607010 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
28606911 |
T |
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| Q |
113 |
ttgtcatgatgaagtaacatatctgtgattaacttaaaagaaagtaccagcaaatttaagcccgatggaactaattgttgtttacaaagctaattggcat |
212 |
Q |
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| T |
28606910 |
ttgtcatgatgaagtaacatatctgtgaataacttaaaagaaagtaccagcaaattta-------------taattgttgtttacaaagctaattggcat |
28606824 |
T |
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| Q |
213 |
taacgtaacgacaatcctttctaatttcaccttgatctcc |
252 |
Q |
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| T |
28606823 |
taacgtaacggcaatcctttctaatttcaccttgatctcc |
28606784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 28664189 - 28664139
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctcc |
252 |
Q |
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| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctcc |
28664139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 28636619 - 28636569
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctcc |
252 |
Q |
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| T |
28636619 |
ctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctcc |
28636569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 28657113 - 28657063
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctcc |
252 |
Q |
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| T |
28657113 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctcc |
28657063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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